Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03685 and ABID97_RS03690 overlap by 4 nucleotides ABID97_RS03690 and ABID97_RS03695 are separated by 10 nucleotides ABID97_RS03695 and ABID97_RS03700 are separated by 1 nucleotides
ABID97_RS03685: ABID97_RS03685 - alanine racemase, at 758,509 to 759,609
_RS03685
ABID97_RS03690: ABID97_RS03690 - hypothetical protein, at 759,606 to 760,328
_RS03690
ABID97_RS03695: ABID97_RS03695 - 2-dehydropantoate 2-reductase, at 760,339 to 761,316
_RS03695
ABID97_RS03700: ABID97_RS03700 - class II aldolase/adducin family protein, at 761,318 to 762,112
_RS03700
Position (kb) 759
760
761 Strain fitness (log2 ratio) -1
0
1
2 at 759.678 kb on + strand at 759.678 kb on + strand at 759.679 kb on - strand, within ABID97_RS03690 at 759.679 kb on - strand, within ABID97_RS03690 at 759.789 kb on + strand, within ABID97_RS03690 at 759.813 kb on + strand, within ABID97_RS03690 at 759.814 kb on - strand, within ABID97_RS03690 at 759.814 kb on - strand, within ABID97_RS03690 at 760.090 kb on - strand, within ABID97_RS03690 at 760.140 kb on + strand, within ABID97_RS03690 at 760.140 kb on + strand, within ABID97_RS03690 at 760.140 kb on + strand, within ABID97_RS03690 at 760.140 kb on + strand, within ABID97_RS03690 at 760.140 kb on + strand, within ABID97_RS03690 at 760.141 kb on - strand, within ABID97_RS03690 at 760.343 kb on + strand at 760.343 kb on + strand at 761.300 kb on + strand at 761.300 kb on + strand at 761.328 kb on + strand at 761.328 kb on + strand at 761.328 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 759,678 + -0.3 759,678 + +0.0 759,679 - ABID97_RS03690 0.10 -0.5 759,679 - ABID97_RS03690 0.10 +0.1 759,789 + ABID97_RS03690 0.25 +0.4 759,813 + ABID97_RS03690 0.29 +0.5 759,814 - ABID97_RS03690 0.29 -0.3 759,814 - ABID97_RS03690 0.29 -0.3 760,090 - ABID97_RS03690 0.67 +1.4 760,140 + ABID97_RS03690 0.74 -0.3 760,140 + ABID97_RS03690 0.74 +0.2 760,140 + ABID97_RS03690 0.74 -0.7 760,140 + ABID97_RS03690 0.74 +2.5 760,140 + ABID97_RS03690 0.74 -0.3 760,141 - ABID97_RS03690 0.74 +1.3 760,343 + -1.1 760,343 + -0.8 761,300 + -0.3 761,300 + +0.5 761,328 + +1.7 761,328 + -0.6 761,328 + -0.1
Or see this region's nucleotide sequence