Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03600 and ABID97_RS03605 are separated by 27 nucleotides ABID97_RS03605 and ABID97_RS03610 overlap by 4 nucleotides ABID97_RS03610 and ABID97_RS03615 are separated by 118 nucleotides ABID97_RS03615 and ABID97_RS03620 are separated by 101 nucleotides
ABID97_RS03600: ABID97_RS03600 - MFS transporter, at 740,774 to 741,862
_RS03600
ABID97_RS03605: ABID97_RS03605 - type IVB secretion system protein IcmH/DotU, at 741,890 to 742,762
_RS03605
ABID97_RS03610: ABID97_RS03610 - pentapeptide repeat-containing protein, at 742,759 to 743,253
_RS03610
ABID97_RS03615: ABID97_RS03615 - hypothetical protein, at 743,372 to 744,085
_RS03615
ABID97_RS03620: ABID97_RS03620 - YifB family Mg chelatase-like AAA ATPase, at 744,187 to 745,740
_RS03620
Position (kb) 742
743
744 Strain fitness (log2 ratio) -2
-1
0
1 at 741.875 kb on - strand at 741.890 kb on - strand at 742.244 kb on + strand, within ABID97_RS03605 at 742.244 kb on + strand, within ABID97_RS03605 at 742.244 kb on + strand, within ABID97_RS03605 at 742.244 kb on + strand, within ABID97_RS03605 at 742.245 kb on - strand, within ABID97_RS03605 at 742.668 kb on + strand, within ABID97_RS03605 at 742.668 kb on + strand, within ABID97_RS03605 at 742.669 kb on - strand, within ABID97_RS03605 at 742.698 kb on + strand at 742.699 kb on - strand at 742.699 kb on - strand at 742.855 kb on + strand, within ABID97_RS03610 at 742.856 kb on - strand, within ABID97_RS03610 at 743.433 kb on + strand at 743.434 kb on - strand at 743.434 kb on - strand at 743.459 kb on + strand, within ABID97_RS03615 at 743.459 kb on + strand, within ABID97_RS03615 at 743.459 kb on + strand, within ABID97_RS03615 at 743.460 kb on - strand, within ABID97_RS03615 at 743.460 kb on - strand, within ABID97_RS03615 at 743.460 kb on - strand, within ABID97_RS03615 at 743.460 kb on - strand, within ABID97_RS03615 at 743.478 kb on - strand, within ABID97_RS03615 at 743.478 kb on - strand, within ABID97_RS03615 at 743.489 kb on + strand, within ABID97_RS03615 at 743.671 kb on - strand, within ABID97_RS03615 at 743.775 kb on - strand, within ABID97_RS03615 at 743.780 kb on + strand, within ABID97_RS03615 at 743.781 kb on - strand, within ABID97_RS03615 at 743.781 kb on - strand, within ABID97_RS03615 at 744.083 kb on + strand at 744.083 kb on + strand at 744.083 kb on + strand at 744.136 kb on + strand at 744.137 kb on - strand at 744.174 kb on - strand at 744.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 741,875 - -0.0 741,890 - +1.6 742,244 + ABID97_RS03605 0.41 -0.7 742,244 + ABID97_RS03605 0.41 -0.1 742,244 + ABID97_RS03605 0.41 +0.4 742,244 + ABID97_RS03605 0.41 -0.3 742,245 - ABID97_RS03605 0.41 +0.7 742,668 + ABID97_RS03605 0.89 -0.1 742,668 + ABID97_RS03605 0.89 +0.6 742,669 - ABID97_RS03605 0.89 -0.2 742,698 + +0.3 742,699 - +0.0 742,699 - +0.1 742,855 + ABID97_RS03610 0.19 -2.2 742,856 - ABID97_RS03610 0.20 -1.1 743,433 + -0.5 743,434 - -0.2 743,434 - -0.4 743,459 + ABID97_RS03615 0.12 +1.3 743,459 + ABID97_RS03615 0.12 +0.5 743,459 + ABID97_RS03615 0.12 +0.1 743,460 - ABID97_RS03615 0.12 -0.5 743,460 - ABID97_RS03615 0.12 -0.4 743,460 - ABID97_RS03615 0.12 -0.6 743,460 - ABID97_RS03615 0.12 +0.5 743,478 - ABID97_RS03615 0.15 -1.0 743,478 - ABID97_RS03615 0.15 -0.0 743,489 + ABID97_RS03615 0.16 -0.2 743,671 - ABID97_RS03615 0.42 -0.8 743,775 - ABID97_RS03615 0.56 +0.3 743,780 + ABID97_RS03615 0.57 -0.1 743,781 - ABID97_RS03615 0.57 +0.7 743,781 - ABID97_RS03615 0.57 -0.1 744,083 + -0.6 744,083 + -0.3 744,083 + -0.2 744,136 + +0.0 744,137 - -0.4 744,174 - +1.1 744,174 - -0.4
Or see this region's nucleotide sequence