Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03440 and ABID97_RS03445 are separated by 4 nucleotides ABID97_RS03445 and ABID97_RS03450 are separated by 48 nucleotides
ABID97_RS03440: ABID97_RS03440 - formimidoylglutamate deiminase, at 699,611 to 701,023
_RS03440
ABID97_RS03445: ABID97_RS03445 - N-formylglutamate deformylase, at 701,028 to 701,843
_RS03445
ABID97_RS03450: ABID97_RS03450 - homocysteine S-methyltransferase family protein, at 701,892 to 702,938
_RS03450
Position (kb) 701
702 Strain fitness (log2 ratio) -2
-1
0
1
2 at 700.942 kb on - strand at 701.247 kb on + strand, within ABID97_RS03445 at 701.328 kb on - strand, within ABID97_RS03445 at 701.328 kb on - strand, within ABID97_RS03445 at 701.349 kb on + strand, within ABID97_RS03445 at 701.350 kb on - strand, within ABID97_RS03445 at 701.350 kb on - strand, within ABID97_RS03445 at 701.350 kb on - strand, within ABID97_RS03445 at 701.733 kb on + strand, within ABID97_RS03445 at 701.734 kb on - strand, within ABID97_RS03445 at 701.734 kb on - strand, within ABID97_RS03445 at 701.734 kb on - strand, within ABID97_RS03445 at 701.734 kb on - strand, within ABID97_RS03445 at 701.760 kb on + strand, within ABID97_RS03445 at 701.842 kb on - strand at 701.879 kb on - strand at 701.879 kb on - strand at 701.892 kb on - strand at 701.907 kb on + strand at 701.907 kb on + strand at 701.907 kb on + strand at 701.907 kb on + strand at 702.012 kb on + strand, within ABID97_RS03450 at 702.114 kb on + strand, within ABID97_RS03450 at 702.183 kb on + strand, within ABID97_RS03450 at 702.183 kb on + strand, within ABID97_RS03450 at 702.184 kb on - strand, within ABID97_RS03450 at 702.384 kb on + strand, within ABID97_RS03450 at 702.384 kb on + strand, within ABID97_RS03450 at 702.384 kb on + strand, within ABID97_RS03450 at 702.387 kb on + strand, within ABID97_RS03450 at 702.387 kb on + strand, within ABID97_RS03450 at 702.387 kb on + strand, within ABID97_RS03450 at 702.388 kb on - strand, within ABID97_RS03450 at 702.388 kb on - strand, within ABID97_RS03450 at 702.388 kb on - strand, within ABID97_RS03450 at 702.388 kb on - strand, within ABID97_RS03450 at 702.492 kb on + strand, within ABID97_RS03450 at 702.493 kb on - strand, within ABID97_RS03450 at 702.666 kb on + strand, within ABID97_RS03450 at 702.666 kb on + strand, within ABID97_RS03450 at 702.666 kb on + strand, within ABID97_RS03450 at 702.666 kb on + strand, within ABID97_RS03450 at 702.666 kb on + strand, within ABID97_RS03450 at 702.667 kb on - strand, within ABID97_RS03450 at 702.667 kb on - strand, within ABID97_RS03450 at 702.667 kb on - strand, within ABID97_RS03450 at 702.667 kb on - strand, within ABID97_RS03450
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 700,942 - -0.3 701,247 + ABID97_RS03445 0.27 -0.9 701,328 - ABID97_RS03445 0.37 -0.2 701,328 - ABID97_RS03445 0.37 +1.3 701,349 + ABID97_RS03445 0.39 +0.1 701,350 - ABID97_RS03445 0.39 -0.2 701,350 - ABID97_RS03445 0.39 +2.7 701,350 - ABID97_RS03445 0.39 +0.3 701,733 + ABID97_RS03445 0.86 -0.1 701,734 - ABID97_RS03445 0.87 -0.2 701,734 - ABID97_RS03445 0.87 +0.1 701,734 - ABID97_RS03445 0.87 -0.2 701,734 - ABID97_RS03445 0.87 +0.7 701,760 + ABID97_RS03445 0.90 -0.9 701,842 - -0.6 701,879 - +0.2 701,879 - -0.5 701,892 - -0.3 701,907 + -0.4 701,907 + -2.4 701,907 + -1.9 701,907 + -0.1 702,012 + ABID97_RS03450 0.11 -0.4 702,114 + ABID97_RS03450 0.21 -0.9 702,183 + ABID97_RS03450 0.28 -0.5 702,183 + ABID97_RS03450 0.28 -0.9 702,184 - ABID97_RS03450 0.28 -0.9 702,384 + ABID97_RS03450 0.47 +0.5 702,384 + ABID97_RS03450 0.47 -0.6 702,384 + ABID97_RS03450 0.47 -0.6 702,387 + ABID97_RS03450 0.47 +0.3 702,387 + ABID97_RS03450 0.47 -0.4 702,387 + ABID97_RS03450 0.47 -1.0 702,388 - ABID97_RS03450 0.47 -1.2 702,388 - ABID97_RS03450 0.47 -0.7 702,388 - ABID97_RS03450 0.47 -0.7 702,388 - ABID97_RS03450 0.47 -0.1 702,492 + ABID97_RS03450 0.57 -1.4 702,493 - ABID97_RS03450 0.57 -0.2 702,666 + ABID97_RS03450 0.74 +0.1 702,666 + ABID97_RS03450 0.74 +0.0 702,666 + ABID97_RS03450 0.74 +0.5 702,666 + ABID97_RS03450 0.74 -1.2 702,666 + ABID97_RS03450 0.74 -1.5 702,667 - ABID97_RS03450 0.74 -0.7 702,667 - ABID97_RS03450 0.74 -1.2 702,667 - ABID97_RS03450 0.74 +1.2 702,667 - ABID97_RS03450 0.74 -0.3
Or see this region's nucleotide sequence