Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02560

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02550 and ABID97_RS02555 are separated by 103 nucleotidesABID97_RS02555 and ABID97_RS02560 are separated by 131 nucleotidesABID97_RS02560 and ABID97_RS02565 are separated by 8 nucleotidesABID97_RS02565 and ABID97_RS02570 overlap by 4 nucleotides ABID97_RS02550: ABID97_RS02550 - M20/M25/M40 family metallo-hydrolase, at 522,050 to 523,414 _RS02550 ABID97_RS02555: ABID97_RS02555 - YidB family protein, at 523,518 to 523,970 _RS02555 ABID97_RS02560: ABID97_RS02560 - MFS transporter, at 524,102 to 525,277 _RS02560 ABID97_RS02565: ABID97_RS02565 - lysophospholipase, at 525,286 to 526,149 _RS02565 ABID97_RS02570: ABID97_RS02570 - M20 family metallopeptidase, at 526,146 to 527,657 _RS02570 Position (kb) 524 525 526Strain fitness (log2 ratio) -2 -1 0 1at 523.227 kb on - strand, within ABID97_RS02550at 523.227 kb on - strand, within ABID97_RS02550at 523.405 kb on + strandat 523.406 kb on - strandat 523.406 kb on - strandat 523.413 kb on - strandat 523.968 kb on + strandat 524.057 kb on + strandat 524.058 kb on - strandat 524.058 kb on - strandat 524.240 kb on + strand, within ABID97_RS02560at 524.240 kb on + strand, within ABID97_RS02560at 524.240 kb on + strand, within ABID97_RS02560at 524.240 kb on + strand, within ABID97_RS02560at 524.240 kb on + strand, within ABID97_RS02560at 524.240 kb on + strand, within ABID97_RS02560at 524.240 kb on + strand, within ABID97_RS02560at 524.241 kb on - strand, within ABID97_RS02560at 524.241 kb on - strand, within ABID97_RS02560at 524.417 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.421 kb on - strand, within ABID97_RS02560at 524.421 kb on - strand, within ABID97_RS02560at 524.421 kb on - strand, within ABID97_RS02560at 524.421 kb on - strand, within ABID97_RS02560at 524.421 kb on - strand, within ABID97_RS02560at 524.421 kb on - strand, within ABID97_RS02560at 524.421 kb on - strand, within ABID97_RS02560at 524.442 kb on - strand, within ABID97_RS02560at 524.591 kb on + strand, within ABID97_RS02560at 524.591 kb on + strand, within ABID97_RS02560at 524.592 kb on - strand, within ABID97_RS02560at 524.592 kb on - strand, within ABID97_RS02560at 524.592 kb on - strand, within ABID97_RS02560at 524.592 kb on - strand, within ABID97_RS02560at 524.592 kb on - strand, within ABID97_RS02560at 524.592 kb on - strand, within ABID97_RS02560at 524.592 kb on - strand, within ABID97_RS02560at 524.592 kb on - strand, within ABID97_RS02560at 525.065 kb on + strand, within ABID97_RS02560at 525.066 kb on - strand, within ABID97_RS02560at 525.066 kb on - strand, within ABID97_RS02560at 525.066 kb on - strand, within ABID97_RS02560at 525.188 kb on + strandat 525.188 kb on + strandat 525.188 kb on + strandat 525.188 kb on + strandat 525.189 kb on - strandat 525.189 kb on - strandat 525.361 kb on + strandat 525.361 kb on + strandat 525.361 kb on + strandat 525.361 kb on + strandat 525.361 kb on + strandat 525.362 kb on - strandat 525.362 kb on - strandat 525.362 kb on - strandat 525.362 kb on - strandat 525.362 kb on - strandat 525.362 kb on - strandat 525.371 kb on + strandat 525.371 kb on + strandat 525.371 kb on + strandat 525.371 kb on + strandat 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.474 kb on - strand, within ABID97_RS02565at 525.474 kb on - strand, within ABID97_RS02565at 526.238 kb on - strandat 526.238 kb on - strandat 526.238 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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523,227 - ABID97_RS02550 0.86 -0.8
523,227 - ABID97_RS02550 0.86 -0.2
523,405 + -0.2
523,406 - -0.2
523,406 - +0.2
523,413 - -0.6
523,968 + -0.5
524,057 + +0.2
524,058 - -0.3
524,058 - +0.3
524,240 + ABID97_RS02560 0.12 +1.5
524,240 + ABID97_RS02560 0.12 +0.3
524,240 + ABID97_RS02560 0.12 +1.0
524,240 + ABID97_RS02560 0.12 -0.3
524,240 + ABID97_RS02560 0.12 -0.3
524,240 + ABID97_RS02560 0.12 -0.4
524,240 + ABID97_RS02560 0.12 -0.1
524,241 - ABID97_RS02560 0.12 +0.3
524,241 - ABID97_RS02560 0.12 +1.3
524,417 + ABID97_RS02560 0.27 +0.7
524,420 + ABID97_RS02560 0.27 -0.7
524,420 + ABID97_RS02560 0.27 -0.2
524,420 + ABID97_RS02560 0.27 +1.3
524,420 + ABID97_RS02560 0.27 -0.2
524,420 + ABID97_RS02560 0.27 +0.1
524,420 + ABID97_RS02560 0.27 +0.6
524,420 + ABID97_RS02560 0.27 +0.4
524,420 + ABID97_RS02560 0.27 +0.5
524,420 + ABID97_RS02560 0.27 +0.9
524,420 + ABID97_RS02560 0.27 -0.1
524,420 + ABID97_RS02560 0.27 +0.3
524,420 + ABID97_RS02560 0.27 +0.2
524,420 + ABID97_RS02560 0.27 +0.0
524,420 + ABID97_RS02560 0.27 -0.8
524,421 - ABID97_RS02560 0.27 -0.6
524,421 - ABID97_RS02560 0.27 +0.1
524,421 - ABID97_RS02560 0.27 -0.2
524,421 - ABID97_RS02560 0.27 +0.3
524,421 - ABID97_RS02560 0.27 -0.4
524,421 - ABID97_RS02560 0.27 +0.0
524,421 - ABID97_RS02560 0.27 -0.2
524,442 - ABID97_RS02560 0.29 +0.3
524,591 + ABID97_RS02560 0.42 +1.0
524,591 + ABID97_RS02560 0.42 +0.5
524,592 - ABID97_RS02560 0.42 +0.2
524,592 - ABID97_RS02560 0.42 -0.5
524,592 - ABID97_RS02560 0.42 +0.1
524,592 - ABID97_RS02560 0.42 -1.9
524,592 - ABID97_RS02560 0.42 -0.1
524,592 - ABID97_RS02560 0.42 -0.1
524,592 - ABID97_RS02560 0.42 +0.9
524,592 - ABID97_RS02560 0.42 -0.2
525,065 + ABID97_RS02560 0.82 +0.9
525,066 - ABID97_RS02560 0.82 +0.4
525,066 - ABID97_RS02560 0.82 +0.0
525,066 - ABID97_RS02560 0.82 +0.0
525,188 + -0.3
525,188 + -0.4
525,188 + -0.0
525,188 + +0.3
525,189 - +0.2
525,189 - +0.2
525,361 + +0.3
525,361 + -0.5
525,361 + -0.2
525,361 + +0.5
525,361 + -0.1
525,362 - +0.1
525,362 - -0.2
525,362 - -1.2
525,362 - -0.9
525,362 - +1.0
525,362 - -0.8
525,371 + -0.2
525,371 + -0.2
525,371 + +0.0
525,371 + -0.3
525,473 + ABID97_RS02565 0.22 -0.2
525,473 + ABID97_RS02565 0.22 +0.3
525,473 + ABID97_RS02565 0.22 -0.6
525,473 + ABID97_RS02565 0.22 -0.4
525,473 + ABID97_RS02565 0.22 +0.5
525,473 + ABID97_RS02565 0.22 +0.4
525,473 + ABID97_RS02565 0.22 +0.2
525,474 - ABID97_RS02565 0.22 +0.4
525,474 - ABID97_RS02565 0.22 -0.1
526,238 - -1.0
526,238 - +0.4
526,238 - -0.2

Or see this region's nucleotide sequence