Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02235 and ABID97_RS02240 are separated by 93 nucleotides ABID97_RS02240 and ABID97_RS02245 are separated by 10 nucleotides ABID97_RS02245 and ABID97_RS02250 are separated by 205 nucleotides
ABID97_RS02235: ABID97_RS02235 - TerC family protein, at 452,657 to 453,343
_RS02235
ABID97_RS02240: ABID97_RS02240 - succinate--CoA ligase subunit alpha, at 453,437 to 454,330
_RS02240
ABID97_RS02245: ABID97_RS02245 - ADP-forming succinate--CoA ligase subunit beta, at 454,341 to 455,507
_RS02245
ABID97_RS02250: ABID97_RS02250 - N-acetyl-gamma-glutamyl-phosphate reductase, at 455,713 to 456,636
_RS02250
Position (kb) 454
455
456 Strain fitness (log2 ratio) -1
0
1
2 at 453.365 kb on + strand at 453.366 kb on - strand at 453.366 kb on - strand at 453.366 kb on - strand at 453.404 kb on - strand at 453.438 kb on + strand at 453.438 kb on + strand at 453.438 kb on + strand at 453.438 kb on + strand at 453.438 kb on + strand at 453.438 kb on + strand at 453.438 kb on + strand at 453.438 kb on + strand at 453.439 kb on - strand at 453.439 kb on - strand at 453.439 kb on - strand at 453.439 kb on - strand at 453.439 kb on - strand at 453.439 kb on - strand at 453.439 kb on - strand at 453.439 kb on - strand at 454.342 kb on + strand at 454.343 kb on - strand at 454.343 kb on - strand at 455.630 kb on + strand at 455.630 kb on + strand at 455.630 kb on + strand at 455.630 kb on + strand at 455.651 kb on + strand at 455.652 kb on - strand at 455.652 kb on - strand at 455.675 kb on + strand at 455.675 kb on + strand at 455.675 kb on + strand at 455.675 kb on + strand at 455.676 kb on - strand at 455.676 kb on - strand at 455.676 kb on - strand at 455.676 kb on - strand at 455.676 kb on - strand at 455.680 kb on - strand at 455.680 kb on - strand at 455.689 kb on + strand at 455.689 kb on + strand at 455.689 kb on + strand at 455.698 kb on + strand at 455.704 kb on + strand at 455.704 kb on + strand at 455.704 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 453,365 + -0.2 453,366 - -0.6 453,366 - +0.7 453,366 - -1.2 453,404 - -1.4 453,438 + +0.6 453,438 + +0.7 453,438 + +0.4 453,438 + +0.6 453,438 + +0.3 453,438 + +0.3 453,438 + -0.6 453,438 + +0.3 453,439 - -0.8 453,439 - -0.5 453,439 - +0.1 453,439 - -0.5 453,439 - +0.0 453,439 - -0.0 453,439 - -0.4 453,439 - +0.5 454,342 + +0.8 454,343 - +0.4 454,343 - +0.3 455,630 + -0.0 455,630 + +0.8 455,630 + +0.2 455,630 + +0.4 455,651 + -0.6 455,652 - -0.4 455,652 - +0.8 455,675 + +0.4 455,675 + -0.1 455,675 + +0.1 455,675 + +1.0 455,676 - +0.0 455,676 - +0.4 455,676 - -0.3 455,676 - +2.0 455,676 - +0.2 455,680 - -0.8 455,680 - -0.8 455,689 + +0.0 455,689 + -0.1 455,689 + -1.1 455,698 + -0.5 455,704 + -1.3 455,704 + -0.0 455,704 + -0.4
Or see this region's nucleotide sequence