Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02235

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02225 and ABID97_RS02230 are separated by 71 nucleotidesABID97_RS02230 and ABID97_RS02235 are separated by 27 nucleotidesABID97_RS02235 and ABID97_RS02240 are separated by 93 nucleotidesABID97_RS02240 and ABID97_RS02245 are separated by 10 nucleotides ABID97_RS02225: ABID97_RS02225 - FHA domain-containing protein, at 451,098 to 451,751 _RS02225 ABID97_RS02230: ABID97_RS02230 - Stp1/IreP family PP2C-type Ser/Thr phosphatase, at 451,823 to 452,629 _RS02230 ABID97_RS02235: ABID97_RS02235 - TerC family protein, at 452,657 to 453,343 _RS02235 ABID97_RS02240: ABID97_RS02240 - succinate--CoA ligase subunit alpha, at 453,437 to 454,330 _RS02240 ABID97_RS02245: ABID97_RS02245 - ADP-forming succinate--CoA ligase subunit beta, at 454,341 to 455,507 _RS02245 Position (kb) 452 453 454Strain fitness (log2 ratio) -1 0 1 2at 451.663 kb on + strand, within ABID97_RS02225at 451.663 kb on + strand, within ABID97_RS02225at 451.663 kb on + strand, within ABID97_RS02225at 451.664 kb on - strand, within ABID97_RS02225at 451.664 kb on - strand, within ABID97_RS02225at 451.664 kb on - strand, within ABID97_RS02225at 451.664 kb on - strand, within ABID97_RS02225at 451.664 kb on - strand, within ABID97_RS02225at 451.825 kb on - strandat 451.825 kb on - strandat 451.879 kb on + strandat 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.013 kb on + strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.014 kb on - strand, within ABID97_RS02230at 452.209 kb on - strand, within ABID97_RS02230at 452.227 kb on + strand, within ABID97_RS02230at 452.404 kb on - strand, within ABID97_RS02230at 452.404 kb on - strand, within ABID97_RS02230at 452.469 kb on + strand, within ABID97_RS02230at 452.469 kb on + strand, within ABID97_RS02230at 452.469 kb on + strand, within ABID97_RS02230at 452.469 kb on + strand, within ABID97_RS02230at 452.469 kb on + strand, within ABID97_RS02230at 452.470 kb on - strand, within ABID97_RS02230at 452.470 kb on - strand, within ABID97_RS02230at 452.470 kb on - strand, within ABID97_RS02230at 452.549 kb on - strandat 452.574 kb on + strandat 452.575 kb on - strandat 452.575 kb on - strandat 452.742 kb on + strand, within ABID97_RS02235at 452.742 kb on + strand, within ABID97_RS02235at 452.743 kb on - strand, within ABID97_RS02235at 452.743 kb on - strand, within ABID97_RS02235at 452.743 kb on - strand, within ABID97_RS02235at 452.743 kb on - strand, within ABID97_RS02235at 452.743 kb on - strand, within ABID97_RS02235at 452.743 kb on - strand, within ABID97_RS02235at 452.743 kb on - strand, within ABID97_RS02235at 452.882 kb on - strand, within ABID97_RS02235at 453.036 kb on + strand, within ABID97_RS02235at 453.037 kb on - strand, within ABID97_RS02235at 453.037 kb on - strand, within ABID97_RS02235at 453.126 kb on + strand, within ABID97_RS02235at 453.126 kb on + strand, within ABID97_RS02235at 453.127 kb on - strand, within ABID97_RS02235at 453.127 kb on - strand, within ABID97_RS02235at 453.365 kb on + strandat 453.366 kb on - strandat 453.366 kb on - strandat 453.366 kb on - strandat 453.404 kb on - strandat 453.438 kb on + strandat 453.438 kb on + strandat 453.438 kb on + strandat 453.438 kb on + strandat 453.438 kb on + strandat 453.438 kb on + strandat 453.438 kb on + strandat 453.438 kb on + strandat 453.439 kb on - strandat 453.439 kb on - strandat 453.439 kb on - strandat 453.439 kb on - strandat 453.439 kb on - strandat 453.439 kb on - strandat 453.439 kb on - strandat 453.439 kb on - strandat 454.342 kb on + strandat 454.343 kb on - strandat 454.343 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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451,663 + ABID97_RS02225 0.86 -0.0
451,663 + ABID97_RS02225 0.86 +0.5
451,663 + ABID97_RS02225 0.86 -0.0
451,664 - ABID97_RS02225 0.87 -0.1
451,664 - ABID97_RS02225 0.87 +0.5
451,664 - ABID97_RS02225 0.87 +1.5
451,664 - ABID97_RS02225 0.87 +0.5
451,664 - ABID97_RS02225 0.87 +0.2
451,825 - -0.5
451,825 - -0.2
451,879 + +1.5
452,013 + ABID97_RS02230 0.24 +0.5
452,013 + ABID97_RS02230 0.24 +1.3
452,013 + ABID97_RS02230 0.24 +0.8
452,013 + ABID97_RS02230 0.24 +1.0
452,013 + ABID97_RS02230 0.24 +1.2
452,013 + ABID97_RS02230 0.24 +1.0
452,013 + ABID97_RS02230 0.24 +1.1
452,013 + ABID97_RS02230 0.24 +1.0
452,013 + ABID97_RS02230 0.24 +0.7
452,013 + ABID97_RS02230 0.24 +1.2
452,013 + ABID97_RS02230 0.24 +1.6
452,014 - ABID97_RS02230 0.24 +1.3
452,014 - ABID97_RS02230 0.24 +1.4
452,014 - ABID97_RS02230 0.24 +1.4
452,014 - ABID97_RS02230 0.24 +1.6
452,014 - ABID97_RS02230 0.24 +1.4
452,014 - ABID97_RS02230 0.24 +1.4
452,014 - ABID97_RS02230 0.24 +0.9
452,014 - ABID97_RS02230 0.24 +2.2
452,014 - ABID97_RS02230 0.24 +0.1
452,014 - ABID97_RS02230 0.24 +2.0
452,014 - ABID97_RS02230 0.24 +1.8
452,014 - ABID97_RS02230 0.24 +2.5
452,209 - ABID97_RS02230 0.48 +2.0
452,227 + ABID97_RS02230 0.50 +1.1
452,404 - ABID97_RS02230 0.72 +1.9
452,404 - ABID97_RS02230 0.72 +0.8
452,469 + ABID97_RS02230 0.80 +1.1
452,469 + ABID97_RS02230 0.80 +1.3
452,469 + ABID97_RS02230 0.80 +1.1
452,469 + ABID97_RS02230 0.80 +0.9
452,469 + ABID97_RS02230 0.80 +1.2
452,470 - ABID97_RS02230 0.80 +1.2
452,470 - ABID97_RS02230 0.80 +1.2
452,470 - ABID97_RS02230 0.80 +1.2
452,549 - +1.3
452,574 + +1.6
452,575 - +1.4
452,575 - +1.4
452,742 + ABID97_RS02235 0.12 +0.4
452,742 + ABID97_RS02235 0.12 -0.8
452,743 - ABID97_RS02235 0.13 -0.2
452,743 - ABID97_RS02235 0.13 +1.1
452,743 - ABID97_RS02235 0.13 -0.6
452,743 - ABID97_RS02235 0.13 +1.2
452,743 - ABID97_RS02235 0.13 +0.4
452,743 - ABID97_RS02235 0.13 +0.8
452,743 - ABID97_RS02235 0.13 +0.8
452,882 - ABID97_RS02235 0.33 -0.8
453,036 + ABID97_RS02235 0.55 -0.3
453,037 - ABID97_RS02235 0.55 -0.4
453,037 - ABID97_RS02235 0.55 -1.0
453,126 + ABID97_RS02235 0.68 -0.1
453,126 + ABID97_RS02235 0.68 +0.4
453,127 - ABID97_RS02235 0.68 -0.2
453,127 - ABID97_RS02235 0.68 +1.1
453,365 + -0.2
453,366 - -0.6
453,366 - +0.7
453,366 - -1.2
453,404 - -1.4
453,438 + +0.6
453,438 + +0.7
453,438 + +0.4
453,438 + +0.6
453,438 + +0.3
453,438 + +0.3
453,438 + -0.6
453,438 + +0.3
453,439 - -0.8
453,439 - -0.5
453,439 - +0.1
453,439 - -0.5
453,439 - +0.0
453,439 - -0.0
453,439 - -0.4
453,439 - +0.5
454,342 + +0.8
454,343 - +0.4
454,343 - +0.3

Or see this region's nucleotide sequence