Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01755 and ABID97_RS01760 are separated by 84 nucleotides ABID97_RS01760 and ABID97_RS01765 are separated by 91 nucleotides
ABID97_RS01755: ABID97_RS01755 - pyruvate kinase, at 343,821 to 345,269
_RS01755
ABID97_RS01760: ABID97_RS01760 - phosphoglycerate kinase, at 345,354 to 346,547
_RS01760
ABID97_RS01765: ABID97_RS01765 - LysR family transcriptional regulator, at 346,639 to 347,547
_RS01765
Position (kb) 345
346
347 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 344.689 kb on + strand, within ABID97_RS01755 at 344.689 kb on + strand, within ABID97_RS01755 at 344.690 kb on - strand, within ABID97_RS01755 at 344.923 kb on + strand, within ABID97_RS01755 at 344.923 kb on + strand, within ABID97_RS01755 at 344.924 kb on - strand, within ABID97_RS01755 at 344.924 kb on - strand, within ABID97_RS01755 at 344.924 kb on - strand, within ABID97_RS01755 at 344.924 kb on - strand, within ABID97_RS01755 at 345.304 kb on + strand at 346.586 kb on + strand at 346.587 kb on - strand at 346.587 kb on - strand at 346.611 kb on + strand at 346.811 kb on + strand, within ABID97_RS01765 at 346.811 kb on + strand, within ABID97_RS01765 at 346.812 kb on - strand, within ABID97_RS01765 at 346.871 kb on + strand, within ABID97_RS01765 at 346.871 kb on + strand, within ABID97_RS01765 at 346.871 kb on + strand, within ABID97_RS01765 at 346.872 kb on - strand, within ABID97_RS01765 at 346.872 kb on - strand, within ABID97_RS01765 at 346.872 kb on - strand, within ABID97_RS01765 at 346.872 kb on - strand, within ABID97_RS01765 at 346.872 kb on - strand, within ABID97_RS01765 at 346.872 kb on - strand, within ABID97_RS01765 at 346.872 kb on - strand, within ABID97_RS01765 at 346.904 kb on + strand, within ABID97_RS01765 at 346.977 kb on - strand, within ABID97_RS01765 at 347.547 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 344,689 + ABID97_RS01755 0.60 -1.5 344,689 + ABID97_RS01755 0.60 -2.1 344,690 - ABID97_RS01755 0.60 -2.8 344,923 + ABID97_RS01755 0.76 -0.8 344,923 + ABID97_RS01755 0.76 +0.1 344,924 - ABID97_RS01755 0.76 +0.2 344,924 - ABID97_RS01755 0.76 -1.2 344,924 - ABID97_RS01755 0.76 -2.3 344,924 - ABID97_RS01755 0.76 -0.7 345,304 + +1.0 346,586 + +1.2 346,587 - +0.1 346,587 - +0.3 346,611 + -0.1 346,811 + ABID97_RS01765 0.19 -0.3 346,811 + ABID97_RS01765 0.19 +0.3 346,812 - ABID97_RS01765 0.19 +0.2 346,871 + ABID97_RS01765 0.26 +0.0 346,871 + ABID97_RS01765 0.26 -0.0 346,871 + ABID97_RS01765 0.26 +0.0 346,872 - ABID97_RS01765 0.26 -0.4 346,872 - ABID97_RS01765 0.26 -0.1 346,872 - ABID97_RS01765 0.26 -0.3 346,872 - ABID97_RS01765 0.26 -0.3 346,872 - ABID97_RS01765 0.26 -1.0 346,872 - ABID97_RS01765 0.26 +0.5 346,872 - ABID97_RS01765 0.26 +0.1 346,904 + ABID97_RS01765 0.29 +0.8 346,977 - ABID97_RS01765 0.37 +1.1 347,547 + +1.1
Or see this region's nucleotide sequence