Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00275

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00265 and ABID97_RS00270 are separated by 48 nucleotidesABID97_RS00270 and ABID97_RS00275 overlap by 4 nucleotidesABID97_RS00275 and ABID97_RS00280 are separated by 65 nucleotidesABID97_RS00280 and ABID97_RS00285 are separated by 45 nucleotides ABID97_RS00265: ABID97_RS00265 - NAD(P)-dependent oxidoreductase, at 60,544 to 61,452 _RS00265 ABID97_RS00270: ABID97_RS00270 - BON domain-containing protein, at 61,501 to 62,259 _RS00270 ABID97_RS00275: ABID97_RS00275 - SIS domain-containing protein, at 62,256 to 62,900 _RS00275 ABID97_RS00280: ABID97_RS00280 - YraN family protein, at 62,966 to 63,343 _RS00280 ABID97_RS00285: ABID97_RS00285 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 63,389 to 64,342 _RS00285 Position (kb) 62 63Strain fitness (log2 ratio) -1 0 1 2at 61.279 kb on + strand, within ABID97_RS00265at 61.279 kb on + strand, within ABID97_RS00265at 61.384 kb on + strandat 61.384 kb on + strandat 61.384 kb on + strandat 61.384 kb on + strandat 61.385 kb on - strandat 61.385 kb on - strandat 61.385 kb on - strandat 61.450 kb on + strandat 61.451 kb on - strandat 61.516 kb on - strandat 61.772 kb on + strand, within ABID97_RS00270at 61.772 kb on + strand, within ABID97_RS00270at 61.772 kb on + strand, within ABID97_RS00270at 61.773 kb on - strand, within ABID97_RS00270at 62.018 kb on + strand, within ABID97_RS00270at 62.018 kb on + strand, within ABID97_RS00270at 62.018 kb on + strand, within ABID97_RS00270at 62.018 kb on + strand, within ABID97_RS00270at 62.019 kb on - strand, within ABID97_RS00270at 62.019 kb on - strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.037 kb on - strand, within ABID97_RS00270at 62.037 kb on - strand, within ABID97_RS00270at 62.037 kb on - strand, within ABID97_RS00270at 62.037 kb on - strand, within ABID97_RS00270at 62.037 kb on - strand, within ABID97_RS00270at 62.037 kb on - strand, within ABID97_RS00270at 62.150 kb on - strand, within ABID97_RS00270at 62.283 kb on + strandat 62.283 kb on + strandat 62.283 kb on + strandat 62.376 kb on + strand, within ABID97_RS00275at 62.376 kb on + strand, within ABID97_RS00275at 62.376 kb on + strand, within ABID97_RS00275at 62.376 kb on + strand, within ABID97_RS00275at 62.377 kb on - strand, within ABID97_RS00275at 62.377 kb on - strand, within ABID97_RS00275at 62.377 kb on - strand, within ABID97_RS00275at 62.377 kb on - strand, within ABID97_RS00275at 62.377 kb on - strand, within ABID97_RS00275at 62.848 kb on + strandat 62.848 kb on + strandat 62.848 kb on + strandat 62.914 kb on - strandat 63.069 kb on + strand, within ABID97_RS00280at 63.069 kb on + strand, within ABID97_RS00280at 63.070 kb on - strand, within ABID97_RS00280at 63.240 kb on + strand, within ABID97_RS00280at 63.241 kb on - strand, within ABID97_RS00280at 63.241 kb on - strand, within ABID97_RS00280at 63.400 kb on - strandat 63.400 kb on - strandat 63.461 kb on + strandat 63.462 kb on - strandat 63.479 kb on + strandat 63.479 kb on + strandat 63.479 kb on + strandat 63.480 kb on - strandat 63.480 kb on - strandat 63.480 kb on - strandat 63.480 kb on - strandat 63.480 kb on - strandat 63.602 kb on + strand, within ABID97_RS00285at 63.711 kb on - strand, within ABID97_RS00285at 63.711 kb on - strand, within ABID97_RS00285at 63.711 kb on - strand, within ABID97_RS00285at 63.711 kb on - strand, within ABID97_RS00285

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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61,279 + ABID97_RS00265 0.81 -0.3
61,279 + ABID97_RS00265 0.81 -0.4
61,384 + +2.5
61,384 + -0.9
61,384 + +0.3
61,384 + +0.1
61,385 - -0.6
61,385 - +0.6
61,385 - +0.0
61,450 + -0.5
61,451 - -0.6
61,516 - +0.2
61,772 + ABID97_RS00270 0.36 -0.5
61,772 + ABID97_RS00270 0.36 -0.7
61,772 + ABID97_RS00270 0.36 -1.3
61,773 - ABID97_RS00270 0.36 -0.1
62,018 + ABID97_RS00270 0.68 +0.5
62,018 + ABID97_RS00270 0.68 -0.5
62,018 + ABID97_RS00270 0.68 +0.1
62,018 + ABID97_RS00270 0.68 -0.5
62,019 - ABID97_RS00270 0.68 -0.1
62,019 - ABID97_RS00270 0.68 +0.1
62,036 + ABID97_RS00270 0.70 -0.4
62,036 + ABID97_RS00270 0.70 -1.0
62,036 + ABID97_RS00270 0.70 +0.2
62,036 + ABID97_RS00270 0.70 +0.1
62,036 + ABID97_RS00270 0.70 +0.2
62,036 + ABID97_RS00270 0.70 -1.1
62,036 + ABID97_RS00270 0.70 -0.6
62,036 + ABID97_RS00270 0.70 +2.5
62,036 + ABID97_RS00270 0.70 -0.1
62,036 + ABID97_RS00270 0.70 +0.2
62,036 + ABID97_RS00270 0.70 -0.7
62,036 + ABID97_RS00270 0.70 -0.9
62,036 + ABID97_RS00270 0.70 +0.1
62,037 - ABID97_RS00270 0.71 +0.4
62,037 - ABID97_RS00270 0.71 +0.4
62,037 - ABID97_RS00270 0.71 -0.5
62,037 - ABID97_RS00270 0.71 -0.6
62,037 - ABID97_RS00270 0.71 +0.1
62,037 - ABID97_RS00270 0.71 -0.5
62,150 - ABID97_RS00270 0.86 +0.2
62,283 + +0.4
62,283 + +0.9
62,283 + +1.1
62,376 + ABID97_RS00275 0.19 +0.6
62,376 + ABID97_RS00275 0.19 +0.3
62,376 + ABID97_RS00275 0.19 +0.8
62,376 + ABID97_RS00275 0.19 +0.7
62,377 - ABID97_RS00275 0.19 +1.1
62,377 - ABID97_RS00275 0.19 +0.6
62,377 - ABID97_RS00275 0.19 +0.8
62,377 - ABID97_RS00275 0.19 +0.5
62,377 - ABID97_RS00275 0.19 +0.5
62,848 + +0.8
62,848 + +0.4
62,848 + +1.0
62,914 - -0.4
63,069 + ABID97_RS00280 0.27 +2.1
63,069 + ABID97_RS00280 0.27 -0.3
63,070 - ABID97_RS00280 0.28 +0.3
63,240 + ABID97_RS00280 0.72 -0.8
63,241 - ABID97_RS00280 0.73 -0.8
63,241 - ABID97_RS00280 0.73 -0.2
63,400 - -0.7
63,400 - +0.4
63,461 + +0.4
63,462 - +0.4
63,479 + +1.2
63,479 + +0.2
63,479 + +0.2
63,480 - +0.5
63,480 - +1.0
63,480 - +0.5
63,480 - +0.5
63,480 - +0.0
63,602 + ABID97_RS00285 0.22 -0.1
63,711 - ABID97_RS00285 0.34 +0.6
63,711 - ABID97_RS00285 0.34 +0.1
63,711 - ABID97_RS00285 0.34 +0.2
63,711 - ABID97_RS00285 0.34 +0.5

Or see this region's nucleotide sequence