Strain Fitness in Escherichia coli BW25113 around b4511

Experiment: D-Galacturonic Acid (C) MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfes and ybdZ are separated by 2 nucleotidesybdZ and entF overlap by 4 nucleotides b0585: fes - enterobactin/ferric enterobactin esterase (NCBI), at 612,038 to 613,162 fes b4511: ybdZ - hypothetical protein (NCBI), at 613,165 to 613,383 ybdZ b0586: entF - enterobactin synthase multienzyme complex component, ATP-dependent (NCBI), at 613,380 to 617,261 entF Position (kb) 613 614Strain fitness (log2 ratio) -2 -1 0 1 2at 612.203 kb on - strand, within fesat 612.203 kb on - strand, within fesat 612.234 kb on + strand, within fesat 612.272 kb on - strand, within fesat 612.424 kb on + strand, within fesat 612.424 kb on + strand, within fesat 612.629 kb on - strand, within fesat 612.629 kb on - strand, within fesat 612.676 kb on - strand, within fesat 612.835 kb on + strand, within fesat 612.840 kb on + strand, within fesat 612.843 kb on - strand, within fesat 612.843 kb on - strand, within fesat 612.868 kb on - strand, within fesat 612.869 kb on - strand, within fesat 612.869 kb on - strand, within fesat 612.871 kb on + strand, within fesat 612.883 kb on + strand, within fesat 612.960 kb on - strand, within fesat 613.018 kb on + strand, within fesat 613.018 kb on + strand, within fesat 613.181 kb on - strandat 613.181 kb on - strandat 613.203 kb on + strand, within ybdZat 613.270 kb on + strand, within ybdZat 613.340 kb on + strand, within ybdZat 613.396 kb on - strandat 613.455 kb on + strandat 613.455 kb on + strandat 613.523 kb on + strandat 613.523 kb on + strandat 613.549 kb on - strandat 613.549 kb on - strandat 613.589 kb on + strandat 613.643 kb on + strandat 613.663 kb on + strandat 613.663 kb on + strandat 613.663 kb on + strandat 613.671 kb on - strandat 613.671 kb on - strandat 613.870 kb on - strand, within entFat 613.923 kb on + strand, within entFat 613.923 kb on + strand, within entFat 613.927 kb on - strand, within entFat 613.974 kb on + strand, within entFat 614.028 kb on - strand, within entFat 614.050 kb on - strand, within entFat 614.050 kb on - strand, within entFat 614.181 kb on - strand, within entFat 614.181 kb on - strand, within entFat 614.216 kb on + strand, within entFat 614.216 kb on + strand, within entF

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) MOPS
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612,203 - fes b0585 0.15 +1.1
612,203 - fes b0585 0.15 -1.1
612,234 + fes b0585 0.17 -1.0
612,272 - fes b0585 0.21 -1.8
612,424 + fes b0585 0.34 -0.8
612,424 + fes b0585 0.34 -0.4
612,629 - fes b0585 0.53 -1.3
612,629 - fes b0585 0.53 -0.3
612,676 - fes b0585 0.57 +0.7
612,835 + fes b0585 0.71 -0.6
612,840 + fes b0585 0.71 -0.3
612,843 - fes b0585 0.72 -0.8
612,843 - fes b0585 0.72 -2.1
612,868 - fes b0585 0.74 -1.8
612,869 - fes b0585 0.74 -0.8
612,869 - fes b0585 0.74 -0.4
612,871 + fes b0585 0.74 -1.3
612,883 + fes b0585 0.75 -0.3
612,960 - fes b0585 0.82 -1.3
613,018 + fes b0585 0.87 -2.4
613,018 + fes b0585 0.87 -0.8
613,181 - +0.0
613,181 - +1.1
613,203 + ybdZ b4511 0.17 +2.3
613,270 + ybdZ b4511 0.48 -1.1
613,340 + ybdZ b4511 0.80 +0.7
613,396 - +1.6
613,455 + +0.2
613,455 + +1.7
613,523 + +0.7
613,523 + +0.3
613,549 - +0.7
613,549 - +0.5
613,589 + -0.4
613,643 + -0.5
613,663 + -0.7
613,663 + +0.7
613,663 + +0.0
613,671 - -0.3
613,671 - -1.1
613,870 - entF b0586 0.13 +1.6
613,923 + entF b0586 0.14 +1.4
613,923 + entF b0586 0.14 +0.5
613,927 - entF b0586 0.14 +0.0
613,974 + entF b0586 0.15 +0.7
614,028 - entF b0586 0.17 -0.2
614,050 - entF b0586 0.17 +0.7
614,050 - entF b0586 0.17 +0.5
614,181 - entF b0586 0.21 -0.9
614,181 - entF b0586 0.21 +0.6
614,216 + entF b0586 0.22 +2.1
614,216 + entF b0586 0.22 +1.5

Or see this region's nucleotide sequence