Strain Fitness in Escherichia coli BW25113 around b2099

Experiment: D-Galacturonic Acid (C) MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyegT and yegU overlap by 4 nucleotidesyegU and yegV overlap by 4 nucleotidesyegV and yegW overlap by 27 nucleotides b2098: yegT - predicted nucleoside transporter (NCBI), at 2,176,843 to 2,178,120 yegT b2099: yegU - predicted hydrolase (NCBI), at 2,178,117 to 2,179,121 yegU b2100: yegV - predicted kinase (NCBI), at 2,179,118 to 2,180,083 yegV b2101: yegW - predicted DNA-binding transcriptional regulator (NCBI), at 2,180,057 to 2,180,803 yegW Position (kb) 2178 2179 2180Strain fitness (log2 ratio) -2 -1 0 1at 2177.161 kb on - strand, within yegTat 2177.165 kb on - strand, within yegTat 2177.287 kb on + strand, within yegTat 2177.301 kb on - strand, within yegTat 2177.359 kb on - strand, within yegTat 2177.359 kb on - strand, within yegTat 2177.451 kb on - strand, within yegTat 2177.521 kb on + strand, within yegTat 2177.521 kb on + strand, within yegTat 2177.531 kb on - strand, within yegTat 2177.790 kb on + strand, within yegTat 2177.830 kb on + strand, within yegTat 2177.862 kb on + strand, within yegTat 2177.873 kb on + strand, within yegTat 2177.966 kb on + strand, within yegTat 2177.974 kb on - strand, within yegTat 2178.144 kb on + strandat 2178.181 kb on + strandat 2178.299 kb on + strand, within yegUat 2178.381 kb on + strand, within yegUat 2178.588 kb on - strand, within yegUat 2178.600 kb on - strand, within yegUat 2178.717 kb on - strand, within yegUat 2178.859 kb on + strand, within yegUat 2178.893 kb on + strand, within yegUat 2178.893 kb on + strand, within yegUat 2178.920 kb on + strand, within yegUat 2179.014 kb on - strand, within yegUat 2179.214 kb on + strandat 2179.221 kb on - strand, within yegVat 2179.222 kb on - strand, within yegVat 2179.310 kb on + strand, within yegVat 2179.396 kb on - strand, within yegVat 2179.448 kb on - strand, within yegVat 2179.906 kb on - strand, within yegVat 2179.906 kb on - strand, within yegVat 2179.993 kb on - strandat 2180.103 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) MOPS
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2,177,161 - yegT b2098 0.25 +0.3
2,177,165 - yegT b2098 0.25 +1.1
2,177,287 + yegT b2098 0.35 -0.2
2,177,301 - yegT b2098 0.36 +1.4
2,177,359 - yegT b2098 0.40 -1.0
2,177,359 - yegT b2098 0.40 -1.0
2,177,451 - yegT b2098 0.48 -0.8
2,177,521 + yegT b2098 0.53 +0.2
2,177,521 + yegT b2098 0.53 +0.6
2,177,531 - yegT b2098 0.54 -0.2
2,177,790 + yegT b2098 0.74 -0.1
2,177,830 + yegT b2098 0.77 +1.2
2,177,862 + yegT b2098 0.80 +0.5
2,177,873 + yegT b2098 0.81 +0.2
2,177,966 + yegT b2098 0.88 +0.3
2,177,974 - yegT b2098 0.88 -0.2
2,178,144 + -0.3
2,178,181 + -1.2
2,178,299 + yegU b2099 0.18 +0.6
2,178,381 + yegU b2099 0.26 +0.3
2,178,588 - yegU b2099 0.47 -0.8
2,178,600 - yegU b2099 0.48 +0.6
2,178,717 - yegU b2099 0.60 +0.2
2,178,859 + yegU b2099 0.74 -0.4
2,178,893 + yegU b2099 0.77 +0.2
2,178,893 + yegU b2099 0.77 +0.3
2,178,920 + yegU b2099 0.80 +0.6
2,179,014 - yegU b2099 0.89 -0.3
2,179,214 + +0.2
2,179,221 - yegV b2100 0.11 +0.6
2,179,222 - yegV b2100 0.11 -0.3
2,179,310 + yegV b2100 0.20 +0.6
2,179,396 - yegV b2100 0.29 +0.5
2,179,448 - yegV b2100 0.34 +0.2
2,179,906 - yegV b2100 0.82 +0.3
2,179,906 - yegV b2100 0.82 +0.7
2,179,993 - -1.8
2,180,103 + +1.2

Or see this region's nucleotide sequence