Strain Fitness in Escherichia coli BW25113 around b0705

Experiment: D-Galacturonic Acid (C) MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybfC and ybfQ are separated by 225 nucleotidesybfQ and ybfL are separated by 140 nucleotidesybfL and ybfD are separated by 130 nucleotides b0704: ybfC - hypothetical protein (NCBI), at 734,873 to 735,442 ybfC b4514: ybfQ - no description, at 735,668 to 735,907 ybfQ b0705: ybfL - putative receptor protein (VIMSS), at 736,048 to 737,184 ybfL b0706: ybfD - hypothetical protein (NCBI), at 737,315 to 738,076 ybfD Position (kb) 736 737 738Strain fitness (log2 ratio) -1 0 1at 736.369 kb on - strand, within ybfLat 736.402 kb on - strand, within ybfLat 736.402 kb on - strand, within ybfLat 736.404 kb on - strand, within ybfLat 736.410 kb on + strand, within ybfLat 736.613 kb on + strand, within ybfLat 737.562 kb on - strand, within ybfDat 737.613 kb on - strand, within ybfDat 737.616 kb on - strand, within ybfDat 737.616 kb on - strand, within ybfDat 737.693 kb on - strand, within ybfDat 737.703 kb on - strand, within ybfDat 737.705 kb on - strand, within ybfDat 737.767 kb on + strand, within ybfDat 737.777 kb on + strand, within ybfDat 737.977 kb on - strand, within ybfDat 737.979 kb on - strand, within ybfDat 738.012 kb on - strandat 738.032 kb on - strandat 738.120 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) MOPS
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736,369 - ybfL b0705 0.28 +0.3
736,402 - ybfL b0705 0.31 -0.5
736,402 - ybfL b0705 0.31 +0.1
736,404 - ybfL b0705 0.31 -1.2
736,410 + ybfL b0705 0.32 +1.3
736,613 + ybfL b0705 0.50 +1.2
737,562 - ybfD b0706 0.32 +0.3
737,613 - ybfD b0706 0.39 -0.3
737,616 - ybfD b0706 0.40 -0.4
737,616 - ybfD b0706 0.40 +1.5
737,693 - ybfD b0706 0.50 -0.1
737,703 - ybfD b0706 0.51 -0.1
737,705 - ybfD b0706 0.51 +0.3
737,767 + ybfD b0706 0.59 -0.0
737,777 + ybfD b0706 0.61 +0.6
737,977 - ybfD b0706 0.87 +0.2
737,979 - ybfD b0706 0.87 +1.0
738,012 - +0.1
738,032 - +0.2
738,120 - -0.3

Or see this region's nucleotide sequence