Experiment: D-Galacturonic Acid (C) MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tauA and tauB are separated by 12 nucleotides tauB and tauC overlap by 4 nucleotides tauC and tauD overlap by 4 nucleotides
b0365: tauA - taurine transport system periplasmic protein (VIMSS), at 384,456 to 385,418
tauA
b0366: tauB - taurine transporter subunit (NCBI), at 385,431 to 386,198
tauB
b0367: tauC - taurine transporter subunit (NCBI), at 386,195 to 387,022
tauC
b0368: tauD - taurine dioxygenase (NCBI), at 387,019 to 387,870
tauD
Position (kb) 385
386
387 Strain fitness (log2 ratio) -1
0
1
2 at 384.434 kb on - strand at 384.434 kb on - strand at 384.435 kb on - strand at 384.435 kb on - strand at 384.439 kb on - strand at 384.449 kb on + strand at 384.452 kb on - strand at 384.452 kb on - strand at 384.454 kb on - strand at 384.454 kb on - strand at 384.465 kb on - strand at 384.483 kb on - strand at 384.505 kb on + strand at 384.505 kb on + strand at 384.526 kb on - strand at 384.526 kb on - strand at 384.537 kb on - strand at 384.537 kb on - strand at 384.537 kb on - strand at 384.539 kb on - strand at 384.547 kb on - strand at 384.548 kb on - strand at 384.609 kb on + strand, within tauA at 384.738 kb on - strand, within tauA at 384.738 kb on - strand, within tauA at 384.860 kb on - strand, within tauA at 384.860 kb on - strand, within tauA at 384.860 kb on - strand, within tauA at 384.943 kb on - strand, within tauA at 384.943 kb on - strand, within tauA at 385.000 kb on + strand, within tauA at 385.040 kb on + strand, within tauA at 385.340 kb on + strand at 385.340 kb on + strand at 385.362 kb on + strand at 385.514 kb on + strand, within tauB at 385.514 kb on + strand, within tauB at 385.523 kb on - strand, within tauB at 385.523 kb on - strand, within tauB at 385.571 kb on + strand, within tauB at 385.571 kb on + strand, within tauB at 385.609 kb on - strand, within tauB at 385.687 kb on + strand, within tauB at 385.692 kb on + strand, within tauB at 385.817 kb on + strand, within tauB at 385.817 kb on + strand, within tauB at 385.868 kb on - strand, within tauB at 385.875 kb on - strand, within tauB at 385.875 kb on - strand, within tauB at 385.926 kb on - strand, within tauB at 385.974 kb on + strand, within tauB at 385.993 kb on + strand, within tauB at 385.999 kb on - strand, within tauB at 386.055 kb on + strand, within tauB at 386.094 kb on + strand, within tauB at 386.245 kb on - strand at 386.275 kb on + strand at 386.297 kb on - strand, within tauC at 386.297 kb on - strand, within tauC at 386.532 kb on + strand, within tauC at 386.532 kb on + strand, within tauC at 386.562 kb on + strand, within tauC at 386.586 kb on - strand, within tauC at 386.729 kb on + strand, within tauC at 386.829 kb on - strand, within tauC at 386.958 kb on + strand at 387.043 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) MOPS remove 384,434 - +0.8 384,434 - +2.4 384,435 - +1.9 384,435 - -0.2 384,439 - +0.8 384,449 + +0.3 384,452 - +0.8 384,452 - +0.5 384,454 - -0.1 384,454 - +0.1 384,465 - +0.4 384,483 - +0.6 384,505 + +1.4 384,505 + +1.8 384,526 - -0.6 384,526 - +0.5 384,537 - -0.1 384,537 - -0.1 384,537 - -0.8 384,539 - -0.7 384,547 - -1.0 384,548 - -0.4 384,609 + tauA b0365 0.16 +0.8 384,738 - tauA b0365 0.29 -0.4 384,738 - tauA b0365 0.29 +0.1 384,860 - tauA b0365 0.42 +0.3 384,860 - tauA b0365 0.42 +0.6 384,860 - tauA b0365 0.42 +1.2 384,943 - tauA b0365 0.51 +0.3 384,943 - tauA b0365 0.51 +0.8 385,000 + tauA b0365 0.56 +0.5 385,040 + tauA b0365 0.61 +0.7 385,340 + +1.4 385,340 + -0.2 385,362 + +1.2 385,514 + tauB b0366 0.11 +0.5 385,514 + tauB b0366 0.11 +1.4 385,523 - tauB b0366 0.12 +0.8 385,523 - tauB b0366 0.12 -0.2 385,571 + tauB b0366 0.18 -0.5 385,571 + tauB b0366 0.18 -0.4 385,609 - tauB b0366 0.23 +1.3 385,687 + tauB b0366 0.33 +1.6 385,692 + tauB b0366 0.34 +1.4 385,817 + tauB b0366 0.50 +2.4 385,817 + tauB b0366 0.50 +0.5 385,868 - tauB b0366 0.57 +0.1 385,875 - tauB b0366 0.58 +0.5 385,875 - tauB b0366 0.58 +0.2 385,926 - tauB b0366 0.64 +0.5 385,974 + tauB b0366 0.71 -0.1 385,993 + tauB b0366 0.73 +1.1 385,999 - tauB b0366 0.74 -0.3 386,055 + tauB b0366 0.81 -0.4 386,094 + tauB b0366 0.86 +0.4 386,245 - +0.2 386,275 + +1.0 386,297 - tauC b0367 0.12 +0.8 386,297 - tauC b0367 0.12 +0.0 386,532 + tauC b0367 0.41 -0.2 386,532 + tauC b0367 0.41 +0.4 386,562 + tauC b0367 0.44 -0.3 386,586 - tauC b0367 0.47 -0.0 386,729 + tauC b0367 0.64 +0.5 386,829 - tauC b0367 0.77 -1.0 386,958 + +0.1 387,043 - -0.4
Or see this region's nucleotide sequence