Strain Fitness in Pseudomonas simiae WCS417 around PS417_02960

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02955 and PS417_02960 are separated by 30 nucleotidesPS417_02960 and PS417_02965 are separated by 279 nucleotides PS417_02955: PS417_02955 - hypothetical protein, at 675,462 to 676,676 _02955 PS417_02960: PS417_02960 - ribosomal protein L11 methyltransferase, at 676,707 to 677,585 _02960 PS417_02965: PS417_02965 - acetyl-CoA carboxylase, at 677,865 to 679,226 _02965 Position (kb) 676 677 678Strain fitness (log2 ratio) -1 0 1 2at 675.877 kb on + strand, within PS417_02955at 675.878 kb on - strand, within PS417_02955at 676.708 kb on + strandat 676.911 kb on + strand, within PS417_02960at 676.912 kb on - strand, within PS417_02960at 676.948 kb on + strand, within PS417_02960at 676.949 kb on - strand, within PS417_02960at 677.534 kb on - strandat 677.534 kb on - strandat 677.534 kb on - strandat 677.534 kb on - strandat 677.788 kb on + strandat 677.867 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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675,877 + PS417_02955 0.34 -1.2
675,878 - PS417_02955 0.34 +0.9
676,708 + -0.1
676,911 + PS417_02960 0.23 -1.0
676,912 - PS417_02960 0.23 -0.7
676,948 + PS417_02960 0.27 -0.3
676,949 - PS417_02960 0.28 -0.3
677,534 - -0.1
677,534 - -0.2
677,534 - +0.1
677,534 - +1.4
677,788 + +2.0
677,867 - +1.4

Or see this region's nucleotide sequence