Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07170 and PS417_07175 are separated by 4 nucleotides PS417_07175 and PS417_07180 are separated by 27 nucleotides PS417_07180 and PS417_07185 are separated by 83 nucleotides
PS417_07170: PS417_07170 - hypothetical protein, at 1,584,060 to 1,585,175
_07170
PS417_07175: PS417_07175 - beta-lactamase, at 1,585,180 to 1,585,938
_07175
PS417_07180: PS417_07180 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 1,585,966 to 1,586,679
_07180
PS417_07185: PS417_07185 - tRNA-Ser, at 1,586,763 to 1,586,852
_07185
Position (kb)
1585
1586 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1584.185 kb on + strand, within PS417_07170 at 1584.288 kb on + strand, within PS417_07170 at 1584.545 kb on - strand, within PS417_07170 at 1584.599 kb on + strand, within PS417_07170 at 1584.615 kb on + strand, within PS417_07170 at 1584.781 kb on - strand, within PS417_07170 at 1584.908 kb on - strand, within PS417_07170 at 1584.908 kb on - strand, within PS417_07170 at 1584.937 kb on - strand, within PS417_07170 at 1584.940 kb on - strand, within PS417_07170 at 1585.072 kb on + strand at 1585.246 kb on + strand at 1585.246 kb on + strand at 1585.246 kb on + strand at 1585.246 kb on + strand at 1585.247 kb on - strand at 1585.408 kb on + strand, within PS417_07175 at 1585.408 kb on + strand, within PS417_07175 at 1585.549 kb on + strand, within PS417_07175 at 1585.549 kb on + strand, within PS417_07175 at 1585.549 kb on + strand at 1585.549 kb on + strand, within PS417_07175 at 1585.550 kb on - strand, within PS417_07175 at 1585.553 kb on + strand, within PS417_07175 at 1585.553 kb on + strand, within PS417_07175 at 1585.554 kb on - strand, within PS417_07175 at 1585.603 kb on + strand, within PS417_07175 at 1585.769 kb on - strand, within PS417_07175 at 1585.949 kb on - strand at 1586.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 1,584,185 + PS417_07170 0.11 +0.1 1,584,288 + PS417_07170 0.20 -0.8 1,584,545 - PS417_07170 0.43 -0.9 1,584,599 + PS417_07170 0.48 -0.3 1,584,615 + PS417_07170 0.50 -0.4 1,584,781 - PS417_07170 0.65 -1.9 1,584,908 - PS417_07170 0.76 -2.9 1,584,908 - PS417_07170 0.76 -0.9 1,584,937 - PS417_07170 0.79 -0.9 1,584,940 - PS417_07170 0.79 -2.1 1,585,072 + -0.5 1,585,246 + +0.5 1,585,246 + +3.1 1,585,246 + +0.4 1,585,246 + +0.1 1,585,247 - -1.9 1,585,408 + PS417_07175 0.30 -0.3 1,585,408 + PS417_07175 0.30 +0.1 1,585,549 + PS417_07175 0.49 -1.6 1,585,549 + PS417_07175 0.49 -0.1 1,585,549 + +0.1 1,585,549 + PS417_07175 0.49 +0.1 1,585,550 - PS417_07175 0.49 -3.8 1,585,553 + PS417_07175 0.49 +0.1 1,585,553 + PS417_07175 0.49 -0.7 1,585,554 - PS417_07175 0.49 -1.5 1,585,603 + PS417_07175 0.56 -0.4 1,585,769 - PS417_07175 0.78 -2.9 1,585,949 - +0.1 1,586,698 - -0.4
Or see this region's nucleotide sequence