Experiment: m.b. Fusidic 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19985 and CA264_19990 are separated by 96 nucleotides CA264_19990 and CA264_19995 are separated by 271 nucleotides
CA264_19985: CA264_19985 - NAD(P)-dependent oxidoreductase, at 4,608,375 to 4,609,250
_19985
CA264_19990: CA264_19990 - hypothetical protein, at 4,609,347 to 4,610,702
_19990
CA264_19995: CA264_19995 - hypothetical protein, at 4,610,974 to 4,611,372
_19995
Position (kb)
4609
4610
4611 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4608.351 kb on + strand at 4608.353 kb on + strand at 4608.353 kb on + strand at 4608.353 kb on + strand at 4608.353 kb on + strand at 4608.354 kb on - strand at 4608.354 kb on - strand at 4608.354 kb on - strand at 4608.354 kb on - strand at 4608.354 kb on - strand at 4608.354 kb on - strand at 4608.357 kb on + strand at 4608.357 kb on + strand at 4608.358 kb on - strand at 4608.358 kb on - strand at 4608.358 kb on - strand at 4608.381 kb on - strand at 4608.381 kb on - strand at 4608.388 kb on + strand at 4608.389 kb on - strand at 4608.391 kb on + strand at 4608.392 kb on - strand at 4608.392 kb on - strand at 4608.392 kb on - strand at 4608.460 kb on + strand at 4608.460 kb on + strand at 4608.467 kb on - strand, within CA264_19985 at 4608.478 kb on + strand, within CA264_19985 at 4608.523 kb on + strand, within CA264_19985 at 4608.625 kb on + strand, within CA264_19985 at 4608.757 kb on - strand, within CA264_19985 at 4608.776 kb on + strand, within CA264_19985 at 4608.780 kb on + strand, within CA264_19985 at 4608.816 kb on + strand, within CA264_19985 at 4608.816 kb on + strand, within CA264_19985 at 4608.817 kb on - strand, within CA264_19985 at 4608.825 kb on + strand, within CA264_19985 at 4608.825 kb on + strand, within CA264_19985 at 4608.886 kb on + strand, within CA264_19985 at 4608.887 kb on - strand, within CA264_19985 at 4608.887 kb on - strand, within CA264_19985 at 4608.891 kb on + strand, within CA264_19985 at 4608.892 kb on - strand, within CA264_19985 at 4608.892 kb on - strand, within CA264_19985 at 4608.892 kb on - strand, within CA264_19985 at 4608.896 kb on - strand, within CA264_19985 at 4608.925 kb on + strand, within CA264_19985 at 4608.963 kb on + strand, within CA264_19985 at 4608.992 kb on + strand, within CA264_19985 at 4608.993 kb on - strand, within CA264_19985 at 4608.997 kb on - strand, within CA264_19985 at 4609.046 kb on + strand, within CA264_19985 at 4609.131 kb on + strand, within CA264_19985 at 4609.272 kb on - strand at 4609.330 kb on + strand at 4609.330 kb on + strand at 4609.330 kb on + strand at 4609.330 kb on + strand at 4609.331 kb on - strand at 4609.335 kb on + strand at 4609.384 kb on + strand at 4609.465 kb on + strand at 4609.466 kb on - strand at 4609.466 kb on - strand at 4609.469 kb on - strand at 4609.469 kb on - strand at 4609.694 kb on + strand, within CA264_19990 at 4609.805 kb on + strand, within CA264_19990 at 4609.808 kb on + strand, within CA264_19990 at 4609.808 kb on - strand, within CA264_19990 at 4610.017 kb on + strand, within CA264_19990 at 4610.018 kb on - strand, within CA264_19990 at 4610.041 kb on + strand, within CA264_19990 at 4610.042 kb on - strand, within CA264_19990 at 4610.056 kb on + strand, within CA264_19990 at 4610.056 kb on + strand, within CA264_19990 at 4610.057 kb on - strand, within CA264_19990 at 4610.120 kb on - strand, within CA264_19990 at 4610.155 kb on + strand, within CA264_19990 at 4610.155 kb on + strand, within CA264_19990 at 4610.156 kb on - strand, within CA264_19990 at 4610.239 kb on + strand, within CA264_19990 at 4610.239 kb on + strand, within CA264_19990 at 4610.293 kb on + strand, within CA264_19990 at 4610.389 kb on + strand, within CA264_19990 at 4610.390 kb on - strand, within CA264_19990 at 4610.390 kb on - strand, within CA264_19990 at 4610.390 kb on - strand, within CA264_19990 at 4610.483 kb on - strand, within CA264_19990 at 4610.483 kb on - strand, within CA264_19990 at 4610.554 kb on + strand, within CA264_19990 at 4610.569 kb on + strand at 4610.569 kb on + strand at 4610.583 kb on - strand at 4610.583 kb on - strand at 4610.608 kb on + strand at 4610.609 kb on - strand at 4610.613 kb on - strand at 4610.638 kb on + strand at 4610.657 kb on - strand at 4610.831 kb on - strand at 4610.848 kb on + strand at 4610.971 kb on + strand at 4610.971 kb on + strand at 4610.971 kb on + strand at 4610.980 kb on + strand at 4611.045 kb on - strand, within CA264_19995 at 4611.236 kb on + strand, within CA264_19995 at 4611.239 kb on + strand, within CA264_19995 at 4611.240 kb on - strand, within CA264_19995 at 4611.240 kb on - strand, within CA264_19995 at 4611.335 kb on + strand at 4611.357 kb on - strand at 4611.357 kb on - strand at 4611.368 kb on - strand at 4611.448 kb on - strand at 4611.449 kb on + strand at 4611.454 kb on - strand at 4611.454 kb on - strand at 4611.468 kb on + strand at 4611.468 kb on + strand at 4611.468 kb on + strand at 4611.471 kb on - strand at 4611.471 kb on - strand at 4611.480 kb on + strand at 4611.499 kb on + strand at 4611.506 kb on - strand at 4611.527 kb on + strand at 4611.540 kb on - strand at 4611.691 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml remove 4,608,351 + +0.1 4,608,353 + -1.7 4,608,353 + +0.9 4,608,353 + -0.1 4,608,353 + +0.4 4,608,354 - -0.3 4,608,354 - +0.1 4,608,354 - +0.1 4,608,354 - -0.2 4,608,354 - +1.1 4,608,354 - +0.1 4,608,357 + +0.1 4,608,357 + -0.5 4,608,358 - -0.1 4,608,358 - +0.4 4,608,358 - +0.6 4,608,381 - -0.2 4,608,381 - -0.7 4,608,388 + -0.7 4,608,389 - -0.3 4,608,391 + +1.1 4,608,392 - +0.7 4,608,392 - -0.2 4,608,392 - -0.0 4,608,460 + +0.9 4,608,460 + +0.6 4,608,467 - CA264_19985 0.11 -0.9 4,608,478 + CA264_19985 0.12 -0.5 4,608,523 + CA264_19985 0.17 -0.2 4,608,625 + CA264_19985 0.29 -0.3 4,608,757 - CA264_19985 0.44 -0.3 4,608,776 + CA264_19985 0.46 +0.2 4,608,780 + CA264_19985 0.46 +1.7 4,608,816 + CA264_19985 0.50 +0.5 4,608,816 + CA264_19985 0.50 +1.1 4,608,817 - CA264_19985 0.50 -1.1 4,608,825 + CA264_19985 0.51 +0.6 4,608,825 + CA264_19985 0.51 -0.7 4,608,886 + CA264_19985 0.58 +1.1 4,608,887 - CA264_19985 0.58 +0.1 4,608,887 - CA264_19985 0.58 +0.9 4,608,891 + CA264_19985 0.59 +0.7 4,608,892 - CA264_19985 0.59 -2.0 4,608,892 - CA264_19985 0.59 +0.6 4,608,892 - CA264_19985 0.59 -0.2 4,608,896 - CA264_19985 0.59 -0.6 4,608,925 + CA264_19985 0.63 +0.4 4,608,963 + CA264_19985 0.67 +0.5 4,608,992 + CA264_19985 0.70 +0.9 4,608,993 - CA264_19985 0.71 +0.1 4,608,997 - CA264_19985 0.71 -1.0 4,609,046 + CA264_19985 0.77 +0.8 4,609,131 + CA264_19985 0.86 +0.9 4,609,272 - -0.9 4,609,330 + -0.2 4,609,330 + +0.0 4,609,330 + +1.7 4,609,330 + -0.7 4,609,331 - -1.6 4,609,335 + +1.6 4,609,384 + -0.1 4,609,465 + -2.3 4,609,466 - -0.2 4,609,466 - +1.5 4,609,469 - +0.1 4,609,469 - -0.6 4,609,694 + CA264_19990 0.26 -0.3 4,609,805 + CA264_19990 0.34 -0.5 4,609,808 + CA264_19990 0.34 +0.5 4,609,808 - CA264_19990 0.34 +0.6 4,610,017 + CA264_19990 0.49 -0.9 4,610,018 - CA264_19990 0.49 -0.4 4,610,041 + CA264_19990 0.51 +0.5 4,610,042 - CA264_19990 0.51 +0.2 4,610,056 + CA264_19990 0.52 +0.6 4,610,056 + CA264_19990 0.52 +0.1 4,610,057 - CA264_19990 0.52 +0.3 4,610,120 - CA264_19990 0.57 -0.3 4,610,155 + CA264_19990 0.60 +0.8 4,610,155 + CA264_19990 0.60 -0.1 4,610,156 - CA264_19990 0.60 -1.1 4,610,239 + CA264_19990 0.66 -0.6 4,610,239 + CA264_19990 0.66 -0.0 4,610,293 + CA264_19990 0.70 +0.1 4,610,389 + CA264_19990 0.77 -0.6 4,610,390 - CA264_19990 0.77 -0.2 4,610,390 - CA264_19990 0.77 +0.0 4,610,390 - CA264_19990 0.77 +0.6 4,610,483 - CA264_19990 0.84 +1.7 4,610,483 - CA264_19990 0.84 +0.3 4,610,554 + CA264_19990 0.89 -0.0 4,610,569 + -0.2 4,610,569 + +0.2 4,610,583 - -0.8 4,610,583 - -0.3 4,610,608 + +0.1 4,610,609 - -0.9 4,610,613 - +1.6 4,610,638 + +3.1 4,610,657 - +0.6 4,610,831 - +0.5 4,610,848 + +0.1 4,610,971 + +0.2 4,610,971 + +0.4 4,610,971 + +0.8 4,610,980 + +0.1 4,611,045 - CA264_19995 0.18 +0.4 4,611,236 + CA264_19995 0.66 +0.8 4,611,239 + CA264_19995 0.66 +0.7 4,611,240 - CA264_19995 0.67 +0.5 4,611,240 - CA264_19995 0.67 +1.4 4,611,335 + -0.2 4,611,357 - +0.1 4,611,357 - -0.1 4,611,368 - +0.2 4,611,448 - -0.6 4,611,449 + +1.1 4,611,454 - +0.5 4,611,454 - +1.1 4,611,468 + -0.1 4,611,468 + +1.6 4,611,468 + -0.4 4,611,471 - -1.0 4,611,471 - +0.2 4,611,480 + +0.0 4,611,499 + +0.1 4,611,506 - +2.7 4,611,527 + -0.9 4,611,540 - -0.3 4,611,691 + +0.1
Or see this region's nucleotide sequence