Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14515

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14505 and CA264_14510 overlap by 8 nucleotidesCA264_14510 and CA264_14515 are separated by 76 nucleotidesCA264_14515 and CA264_14520 are separated by 842 nucleotides CA264_14505: CA264_14505 - hypothetical protein, at 3,403,201 to 3,404,910 _14505 CA264_14510: CA264_14510 - hypothetical protein, at 3,404,903 to 3,405,655 _14510 CA264_14515: CA264_14515 - peptidase M23, at 3,405,732 to 3,406,967 _14515 CA264_14520: CA264_14520 - twin-arginine translocase TatA/TatE family subunit, at 3,407,810 to 3,408,022 _14520 Position (kb) 3405 3406 3407Strain fitness (log2 ratio) -2 -1 0 1 2at 3404.774 kb on + strandat 3404.775 kb on - strandat 3404.869 kb on + strandat 3404.870 kb on - strandat 3404.902 kb on + strandat 3404.908 kb on + strandat 3404.916 kb on - strandat 3405.012 kb on + strand, within CA264_14510at 3405.012 kb on + strand, within CA264_14510at 3405.013 kb on - strand, within CA264_14510at 3405.019 kb on - strand, within CA264_14510at 3405.019 kb on - strand, within CA264_14510at 3405.039 kb on - strand, within CA264_14510at 3405.197 kb on + strand, within CA264_14510at 3405.198 kb on - strand, within CA264_14510at 3405.274 kb on + strand, within CA264_14510at 3405.274 kb on + strand, within CA264_14510at 3405.312 kb on - strand, within CA264_14510at 3405.361 kb on + strand, within CA264_14510at 3405.362 kb on - strand, within CA264_14510at 3405.363 kb on + strand, within CA264_14510at 3405.364 kb on - strand, within CA264_14510at 3405.364 kb on - strand, within CA264_14510at 3405.364 kb on - strand, within CA264_14510at 3405.395 kb on + strand, within CA264_14510at 3405.400 kb on + strand, within CA264_14510at 3405.423 kb on + strand, within CA264_14510at 3405.476 kb on + strand, within CA264_14510at 3405.476 kb on + strand, within CA264_14510at 3405.562 kb on + strand, within CA264_14510at 3405.562 kb on + strand, within CA264_14510at 3405.563 kb on - strand, within CA264_14510at 3405.633 kb on - strandat 3405.649 kb on + strandat 3405.654 kb on - strandat 3405.823 kb on + strandat 3405.961 kb on + strand, within CA264_14515at 3405.991 kb on + strand, within CA264_14515at 3406.080 kb on + strand, within CA264_14515at 3406.080 kb on + strand, within CA264_14515at 3406.109 kb on + strand, within CA264_14515at 3406.250 kb on - strand, within CA264_14515at 3406.303 kb on + strand, within CA264_14515at 3406.450 kb on + strand, within CA264_14515at 3406.682 kb on + strand, within CA264_14515at 3406.751 kb on - strand, within CA264_14515at 3406.804 kb on - strand, within CA264_14515at 3406.875 kb on + strandat 3407.074 kb on - strandat 3407.180 kb on + strandat 3407.186 kb on + strandat 3407.186 kb on + strandat 3407.187 kb on - strandat 3407.187 kb on - strandat 3407.288 kb on + strandat 3407.289 kb on - strandat 3407.293 kb on - strandat 3407.293 kb on - strandat 3407.295 kb on - strandat 3407.298 kb on + strandat 3407.298 kb on + strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.300 kb on + strandat 3407.300 kb on + strandat 3407.300 kb on + strandat 3407.301 kb on - strandat 3407.326 kb on - strandat 3407.326 kb on - strandat 3407.347 kb on + strandat 3407.368 kb on - strandat 3407.390 kb on + strandat 3407.390 kb on + strandat 3407.656 kb on + strandat 3407.669 kb on + strandat 3407.669 kb on + strandat 3407.670 kb on - strandat 3407.672 kb on - strandat 3407.672 kb on - strandat 3407.686 kb on + strandat 3407.740 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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3,404,774 + +0.2
3,404,775 - +0.1
3,404,869 + +0.4
3,404,870 - +0.0
3,404,902 + -0.1
3,404,908 + -0.4
3,404,916 - +1.1
3,405,012 + CA264_14510 0.14 +0.3
3,405,012 + CA264_14510 0.14 +0.2
3,405,013 - CA264_14510 0.15 -0.6
3,405,019 - CA264_14510 0.15 +0.5
3,405,019 - CA264_14510 0.15 -1.5
3,405,039 - CA264_14510 0.18 +0.5
3,405,197 + CA264_14510 0.39 -1.5
3,405,198 - CA264_14510 0.39 -1.0
3,405,274 + CA264_14510 0.49 -0.0
3,405,274 + CA264_14510 0.49 +0.8
3,405,312 - CA264_14510 0.54 -0.3
3,405,361 + CA264_14510 0.61 -0.3
3,405,362 - CA264_14510 0.61 -0.3
3,405,363 + CA264_14510 0.61 +0.1
3,405,364 - CA264_14510 0.61 +0.3
3,405,364 - CA264_14510 0.61 +0.3
3,405,364 - CA264_14510 0.61 -0.8
3,405,395 + CA264_14510 0.65 -1.0
3,405,400 + CA264_14510 0.66 -0.5
3,405,423 + CA264_14510 0.69 +0.3
3,405,476 + CA264_14510 0.76 +0.2
3,405,476 + CA264_14510 0.76 +2.5
3,405,562 + CA264_14510 0.88 -0.3
3,405,562 + CA264_14510 0.88 +0.3
3,405,563 - CA264_14510 0.88 +2.1
3,405,633 - -0.7
3,405,649 + -0.7
3,405,654 - +0.5
3,405,823 + +0.7
3,405,961 + CA264_14515 0.19 +0.1
3,405,991 + CA264_14515 0.21 -2.3
3,406,080 + CA264_14515 0.28 +0.1
3,406,080 + CA264_14515 0.28 -0.6
3,406,109 + CA264_14515 0.31 -0.9
3,406,250 - CA264_14515 0.42 -0.2
3,406,303 + CA264_14515 0.46 -1.0
3,406,450 + CA264_14515 0.58 -0.9
3,406,682 + CA264_14515 0.77 -1.3
3,406,751 - CA264_14515 0.82 +0.1
3,406,804 - CA264_14515 0.87 +0.1
3,406,875 + -2.0
3,407,074 - -0.8
3,407,180 + +0.2
3,407,186 + -1.1
3,407,186 + +0.1
3,407,187 - +0.6
3,407,187 - -0.1
3,407,288 + +0.4
3,407,289 - -0.2
3,407,293 - +1.1
3,407,293 - +0.1
3,407,295 - +0.5
3,407,298 + -0.4
3,407,298 + -0.0
3,407,299 - -0.4
3,407,299 - +1.1
3,407,299 - -1.5
3,407,299 - +0.4
3,407,299 - +0.1
3,407,299 - -0.2
3,407,299 - +0.8
3,407,300 + -0.1
3,407,300 + -0.8
3,407,300 + +0.3
3,407,301 - +0.2
3,407,326 - -0.1
3,407,326 - +1.1
3,407,347 + +0.2
3,407,368 - +0.1
3,407,390 + +0.4
3,407,390 + +0.7
3,407,656 + -0.2
3,407,669 + -0.2
3,407,669 + -0.4
3,407,670 - +0.1
3,407,672 - -0.3
3,407,672 - -0.5
3,407,686 + +0.1
3,407,740 - -0.5

Or see this region's nucleotide sequence