Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14395

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14390 and CA264_14395 are separated by 18 nucleotidesCA264_14395 and CA264_14400 are separated by 195 nucleotidesCA264_14400 and CA264_14405 are separated by 105 nucleotides CA264_14390: CA264_14390 - hypothetical protein, at 3,377,977 to 3,379,647 _14390 CA264_14395: CA264_14395 - endonuclease III, at 3,379,666 to 3,380,373 _14395 CA264_14400: CA264_14400 - MBL fold metallo-hydrolase, at 3,380,569 to 3,381,261 _14400 CA264_14405: CA264_14405 - hypothetical protein, at 3,381,367 to 3,382,002 _14405 Position (kb) 3379 3380 3381Strain fitness (log2 ratio) -2 -1 0 1 2at 3378.689 kb on + strand, within CA264_14390at 3378.689 kb on + strand, within CA264_14390at 3378.730 kb on - strand, within CA264_14390at 3378.797 kb on + strand, within CA264_14390at 3378.798 kb on - strand, within CA264_14390at 3378.798 kb on - strand, within CA264_14390at 3378.802 kb on + strand, within CA264_14390at 3378.802 kb on + strand, within CA264_14390at 3378.846 kb on - strand, within CA264_14390at 3378.873 kb on + strand, within CA264_14390at 3378.875 kb on + strand, within CA264_14390at 3378.943 kb on - strand, within CA264_14390at 3379.213 kb on - strand, within CA264_14390at 3379.588 kb on + strandat 3379.682 kb on - strandat 3379.709 kb on + strandat 3379.754 kb on + strand, within CA264_14395at 3379.806 kb on - strand, within CA264_14395at 3379.900 kb on + strand, within CA264_14395at 3380.092 kb on + strand, within CA264_14395at 3380.118 kb on - strand, within CA264_14395at 3380.204 kb on + strand, within CA264_14395at 3380.205 kb on - strand, within CA264_14395at 3380.227 kb on - strand, within CA264_14395at 3380.373 kb on + strandat 3380.373 kb on + strandat 3380.401 kb on + strandat 3380.477 kb on + strandat 3380.505 kb on + strandat 3380.517 kb on - strandat 3380.517 kb on - strandat 3380.519 kb on - strandat 3380.527 kb on - strandat 3380.545 kb on + strandat 3380.577 kb on + strandat 3380.585 kb on + strandat 3380.676 kb on + strand, within CA264_14400at 3380.822 kb on + strand, within CA264_14400at 3380.845 kb on - strand, within CA264_14400at 3380.845 kb on - strand, within CA264_14400at 3380.845 kb on - strand, within CA264_14400at 3380.859 kb on + strand, within CA264_14400at 3380.860 kb on - strand, within CA264_14400at 3380.942 kb on + strand, within CA264_14400at 3380.951 kb on - strand, within CA264_14400at 3380.986 kb on + strand, within CA264_14400at 3381.020 kb on - strand, within CA264_14400at 3381.136 kb on + strand, within CA264_14400at 3381.137 kb on - strand, within CA264_14400at 3381.139 kb on + strand, within CA264_14400at 3381.139 kb on + strand, within CA264_14400at 3381.140 kb on - strand, within CA264_14400at 3381.270 kb on + strandat 3381.270 kb on + strandat 3381.271 kb on - strandat 3381.273 kb on - strandat 3381.294 kb on - strandat 3381.347 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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3,378,689 + CA264_14390 0.43 -0.2
3,378,689 + CA264_14390 0.43 +1.1
3,378,730 - CA264_14390 0.45 +0.2
3,378,797 + CA264_14390 0.49 -0.3
3,378,798 - CA264_14390 0.49 +0.7
3,378,798 - CA264_14390 0.49 +1.1
3,378,802 + CA264_14390 0.49 -0.4
3,378,802 + CA264_14390 0.49 +0.1
3,378,846 - CA264_14390 0.52 -0.6
3,378,873 + CA264_14390 0.54 +0.3
3,378,875 + CA264_14390 0.54 +0.9
3,378,943 - CA264_14390 0.58 -0.2
3,379,213 - CA264_14390 0.74 -0.9
3,379,588 + -1.5
3,379,682 - +0.3
3,379,709 + -0.1
3,379,754 + CA264_14395 0.12 -0.6
3,379,806 - CA264_14395 0.20 -0.2
3,379,900 + CA264_14395 0.33 -0.2
3,380,092 + CA264_14395 0.60 -1.2
3,380,118 - CA264_14395 0.64 -0.1
3,380,204 + CA264_14395 0.76 -0.8
3,380,205 - CA264_14395 0.76 -0.6
3,380,227 - CA264_14395 0.79 +1.1
3,380,373 + +0.1
3,380,373 + +1.1
3,380,401 + -1.0
3,380,477 + +0.1
3,380,505 + +0.2
3,380,517 - -0.1
3,380,517 - -1.4
3,380,519 - -0.3
3,380,527 - +1.7
3,380,545 + +1.0
3,380,577 + +0.1
3,380,585 + -0.4
3,380,676 + CA264_14400 0.15 -0.1
3,380,822 + CA264_14400 0.37 -0.6
3,380,845 - CA264_14400 0.40 -0.9
3,380,845 - CA264_14400 0.40 -0.1
3,380,845 - CA264_14400 0.40 +2.7
3,380,859 + CA264_14400 0.42 +0.3
3,380,860 - CA264_14400 0.42 -1.5
3,380,942 + CA264_14400 0.54 +0.4
3,380,951 - CA264_14400 0.55 -0.3
3,380,986 + CA264_14400 0.60 +0.1
3,381,020 - CA264_14400 0.65 -0.4
3,381,136 + CA264_14400 0.82 -0.0
3,381,137 - CA264_14400 0.82 -0.3
3,381,139 + CA264_14400 0.82 -0.3
3,381,139 + CA264_14400 0.82 +0.4
3,381,140 - CA264_14400 0.82 +1.9
3,381,270 + -1.2
3,381,270 + +0.1
3,381,271 - -1.2
3,381,273 - -2.2
3,381,294 - +0.4
3,381,347 + -0.7

Or see this region's nucleotide sequence