Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13360

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13355 and CA264_13360 overlap by 8 nucleotidesCA264_13360 and CA264_13365 are separated by 191 nucleotides CA264_13355: CA264_13355 - ABC transporter permease, at 3,114,654 to 3,116,009 _13355 CA264_13360: CA264_13360 - ABC transporter ATP-binding protein, at 3,116,002 to 3,116,913 _13360 CA264_13365: CA264_13365 - molecular chaperone DnaJ, at 3,117,105 to 3,118,256 _13365 Position (kb) 3116 3117Strain fitness (log2 ratio) -2 -1 0 1at 3115.059 kb on + strand, within CA264_13355at 3115.281 kb on + strand, within CA264_13355at 3115.386 kb on - strand, within CA264_13355at 3115.386 kb on - strand, within CA264_13355at 3115.450 kb on + strand, within CA264_13355at 3115.450 kb on + strand, within CA264_13355at 3115.480 kb on - strand, within CA264_13355at 3115.487 kb on + strand, within CA264_13355at 3115.487 kb on + strand, within CA264_13355at 3115.488 kb on - strand, within CA264_13355at 3115.557 kb on + strand, within CA264_13355at 3115.653 kb on + strand, within CA264_13355at 3115.654 kb on - strand, within CA264_13355at 3115.676 kb on - strand, within CA264_13355at 3115.720 kb on + strand, within CA264_13355at 3115.999 kb on - strandat 3115.999 kb on - strandat 3116.003 kb on + strandat 3116.023 kb on + strandat 3116.050 kb on - strandat 3116.083 kb on + strandat 3116.234 kb on + strand, within CA264_13360at 3116.249 kb on + strand, within CA264_13360at 3116.260 kb on + strand, within CA264_13360at 3116.261 kb on - strand, within CA264_13360at 3116.290 kb on - strand, within CA264_13360at 3116.290 kb on - strand, within CA264_13360at 3116.316 kb on + strand, within CA264_13360at 3116.362 kb on - strand, within CA264_13360at 3116.566 kb on + strand, within CA264_13360at 3116.660 kb on + strand, within CA264_13360at 3116.661 kb on - strand, within CA264_13360at 3116.917 kb on + strandat 3116.917 kb on + strandat 3116.940 kb on + strandat 3116.940 kb on + strandat 3116.941 kb on - strandat 3116.942 kb on + strandat 3116.944 kb on + strandat 3116.944 kb on + strandat 3116.945 kb on - strandat 3116.959 kb on - strandat 3116.959 kb on - strandat 3116.978 kb on - strandat 3116.989 kb on + strandat 3117.063 kb on + strandat 3117.086 kb on - strandat 3117.087 kb on + strandat 3117.425 kb on - strand, within CA264_13365at 3117.425 kb on - strand, within CA264_13365

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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3,115,059 + CA264_13355 0.30 -1.3
3,115,281 + CA264_13355 0.46 -0.5
3,115,386 - CA264_13355 0.54 -2.0
3,115,386 - CA264_13355 0.54 -0.2
3,115,450 + CA264_13355 0.59 -1.2
3,115,450 + CA264_13355 0.59 +0.0
3,115,480 - CA264_13355 0.61 -0.2
3,115,487 + CA264_13355 0.61 +0.0
3,115,487 + CA264_13355 0.61 -0.6
3,115,488 - CA264_13355 0.62 -0.6
3,115,557 + CA264_13355 0.67 -0.8
3,115,653 + CA264_13355 0.74 -0.6
3,115,654 - CA264_13355 0.74 -1.1
3,115,676 - CA264_13355 0.75 -1.0
3,115,720 + CA264_13355 0.79 -0.7
3,115,999 - -1.3
3,115,999 - +0.3
3,116,003 + -1.8
3,116,023 + -0.5
3,116,050 - -0.9
3,116,083 + -0.6
3,116,234 + CA264_13360 0.25 +1.7
3,116,249 + CA264_13360 0.27 -1.5
3,116,260 + CA264_13360 0.28 +0.1
3,116,261 - CA264_13360 0.28 +1.4
3,116,290 - CA264_13360 0.32 +1.0
3,116,290 - CA264_13360 0.32 +0.2
3,116,316 + CA264_13360 0.34 +1.0
3,116,362 - CA264_13360 0.39 -0.8
3,116,566 + CA264_13360 0.62 -0.7
3,116,660 + CA264_13360 0.72 +0.0
3,116,661 - CA264_13360 0.72 +0.0
3,116,917 + +0.4
3,116,917 + -1.9
3,116,940 + +0.0
3,116,940 + -0.3
3,116,941 - -1.3
3,116,942 + +0.0
3,116,944 + +0.1
3,116,944 + -0.2
3,116,945 - -0.3
3,116,959 - -0.5
3,116,959 - +0.2
3,116,978 - +1.4
3,116,989 + +1.5
3,117,063 + +0.3
3,117,086 - -2.0
3,117,087 + +0.5
3,117,425 - CA264_13365 0.28 -1.0
3,117,425 - CA264_13365 0.28 -0.3

Or see this region's nucleotide sequence