Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08915

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08910 and CA264_08915 are separated by 190 nucleotidesCA264_08915 and CA264_08920 are separated by 225 nucleotides CA264_08910: CA264_08910 - peptidase M28, at 2,081,130 to 2,082,683 _08910 CA264_08915: CA264_08915 - hypothetical protein, at 2,082,874 to 2,083,821 _08915 CA264_08920: CA264_08920 - phosphoserine phosphatase, at 2,084,047 to 2,084,667 _08920 Position (kb) 2082 2083 2084Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2081.876 kb on + strand, within CA264_08910at 2081.876 kb on + strand, within CA264_08910at 2081.877 kb on - strand, within CA264_08910at 2081.883 kb on + strand, within CA264_08910at 2081.883 kb on + strand, within CA264_08910at 2081.893 kb on + strand, within CA264_08910at 2081.894 kb on - strand, within CA264_08910at 2081.907 kb on - strand, within CA264_08910at 2081.957 kb on + strand, within CA264_08910at 2082.006 kb on + strand, within CA264_08910at 2082.007 kb on - strand, within CA264_08910at 2082.017 kb on - strand, within CA264_08910at 2082.068 kb on + strand, within CA264_08910at 2082.074 kb on + strand, within CA264_08910at 2082.075 kb on - strand, within CA264_08910at 2082.117 kb on + strand, within CA264_08910at 2082.118 kb on - strand, within CA264_08910at 2082.266 kb on - strand, within CA264_08910at 2082.266 kb on - strand, within CA264_08910at 2082.301 kb on - strand, within CA264_08910at 2082.306 kb on + strand, within CA264_08910at 2082.307 kb on - strand, within CA264_08910at 2082.322 kb on + strand, within CA264_08910at 2082.322 kb on + strand, within CA264_08910at 2082.322 kb on + strand, within CA264_08910at 2082.434 kb on + strand, within CA264_08910at 2082.435 kb on - strand, within CA264_08910at 2082.439 kb on + strand, within CA264_08910at 2082.439 kb on + strand, within CA264_08910at 2082.440 kb on - strand, within CA264_08910at 2082.449 kb on + strand, within CA264_08910at 2082.449 kb on + strand, within CA264_08910at 2082.468 kb on + strand, within CA264_08910at 2082.469 kb on - strand, within CA264_08910at 2082.495 kb on + strand, within CA264_08910at 2082.496 kb on - strand, within CA264_08910at 2082.500 kb on + strand, within CA264_08910at 2082.501 kb on - strand, within CA264_08910at 2082.536 kb on - strandat 2082.541 kb on + strandat 2082.545 kb on + strandat 2082.545 kb on + strandat 2082.545 kb on + strandat 2082.545 kb on + strandat 2082.546 kb on - strandat 2082.546 kb on - strandat 2082.546 kb on - strandat 2082.546 kb on - strandat 2082.547 kb on + strandat 2082.547 kb on + strandat 2082.547 kb on + strandat 2082.547 kb on + strandat 2082.548 kb on - strandat 2082.548 kb on - strandat 2082.548 kb on - strandat 2082.556 kb on - strandat 2082.676 kb on + strandat 2082.695 kb on + strandat 2082.696 kb on - strandat 2082.700 kb on - strandat 2082.702 kb on - strandat 2082.702 kb on - strandat 2082.811 kb on - strandat 2082.885 kb on - strandat 2082.885 kb on - strandat 2082.885 kb on - strandat 2082.887 kb on + strandat 2082.888 kb on - strandat 2082.888 kb on - strandat 2082.888 kb on - strandat 2082.888 kb on - strandat 2082.931 kb on + strandat 2082.945 kb on - strandat 2083.015 kb on + strand, within CA264_08915at 2083.098 kb on + strand, within CA264_08915at 2083.140 kb on + strand, within CA264_08915at 2083.141 kb on - strand, within CA264_08915at 2083.179 kb on - strand, within CA264_08915at 2083.263 kb on - strand, within CA264_08915at 2083.302 kb on - strand, within CA264_08915at 2083.572 kb on + strand, within CA264_08915at 2083.572 kb on + strand, within CA264_08915at 2083.574 kb on + strand, within CA264_08915at 2083.575 kb on - strand, within CA264_08915at 2083.575 kb on - strand, within CA264_08915at 2083.575 kb on - strand, within CA264_08915at 2083.580 kb on - strand, within CA264_08915at 2083.580 kb on - strand, within CA264_08915at 2083.580 kb on - strand, within CA264_08915at 2083.597 kb on - strand, within CA264_08915at 2083.597 kb on - strand, within CA264_08915at 2083.610 kb on + strand, within CA264_08915at 2083.611 kb on - strand, within CA264_08915at 2083.611 kb on - strand, within CA264_08915at 2083.704 kb on + strand, within CA264_08915at 2083.704 kb on + strand, within CA264_08915at 2083.705 kb on - strand, within CA264_08915at 2083.874 kb on + strandat 2083.881 kb on - strandat 2083.984 kb on - strandat 2084.016 kb on + strandat 2084.044 kb on - strandat 2084.131 kb on + strand, within CA264_08920at 2084.131 kb on + strand, within CA264_08920at 2084.189 kb on - strand, within CA264_08920at 2084.189 kb on - strand, within CA264_08920at 2084.191 kb on + strand, within CA264_08920at 2084.191 kb on + strand, within CA264_08920at 2084.191 kb on + strand, within CA264_08920at 2084.191 kb on + strand, within CA264_08920at 2084.191 kb on + strand, within CA264_08920at 2084.192 kb on - strand, within CA264_08920at 2084.192 kb on - strand, within CA264_08920at 2084.192 kb on - strand, within CA264_08920at 2084.250 kb on + strand, within CA264_08920at 2084.254 kb on + strand, within CA264_08920at 2084.254 kb on + strand, within CA264_08920at 2084.258 kb on + strand, within CA264_08920at 2084.259 kb on - strand, within CA264_08920at 2084.384 kb on + strand, within CA264_08920at 2084.384 kb on + strand, within CA264_08920at 2084.385 kb on - strand, within CA264_08920at 2084.386 kb on + strand, within CA264_08920at 2084.387 kb on - strand, within CA264_08920at 2084.413 kb on + strand, within CA264_08920at 2084.437 kb on + strand, within CA264_08920at 2084.488 kb on + strand, within CA264_08920at 2084.498 kb on + strand, within CA264_08920at 2084.768 kb on - strandat 2084.776 kb on - strandat 2084.794 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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2,081,876 + CA264_08910 0.48 +2.5
2,081,876 + CA264_08910 0.48 -0.0
2,081,877 - CA264_08910 0.48 -0.9
2,081,883 + CA264_08910 0.48 -0.7
2,081,883 + CA264_08910 0.48 +1.9
2,081,893 + CA264_08910 0.49 -0.5
2,081,894 - CA264_08910 0.49 +0.5
2,081,907 - CA264_08910 0.50 -0.3
2,081,957 + CA264_08910 0.53 +0.4
2,082,006 + CA264_08910 0.56 +0.1
2,082,007 - CA264_08910 0.56 -0.3
2,082,017 - CA264_08910 0.57 -0.1
2,082,068 + CA264_08910 0.60 +0.1
2,082,074 + CA264_08910 0.61 +0.0
2,082,075 - CA264_08910 0.61 +0.9
2,082,117 + CA264_08910 0.64 -0.6
2,082,118 - CA264_08910 0.64 -0.0
2,082,266 - CA264_08910 0.73 +0.0
2,082,266 - CA264_08910 0.73 -1.1
2,082,301 - CA264_08910 0.75 -0.1
2,082,306 + CA264_08910 0.76 -0.1
2,082,307 - CA264_08910 0.76 -1.2
2,082,322 + CA264_08910 0.77 -1.7
2,082,322 + CA264_08910 0.77 +0.1
2,082,322 + CA264_08910 0.77 -0.3
2,082,434 + CA264_08910 0.84 -0.3
2,082,435 - CA264_08910 0.84 -1.0
2,082,439 + CA264_08910 0.84 +0.6
2,082,439 + CA264_08910 0.84 -0.4
2,082,440 - CA264_08910 0.84 +0.1
2,082,449 + CA264_08910 0.85 +0.6
2,082,449 + CA264_08910 0.85 -0.1
2,082,468 + CA264_08910 0.86 +0.5
2,082,469 - CA264_08910 0.86 -0.9
2,082,495 + CA264_08910 0.88 -0.0
2,082,496 - CA264_08910 0.88 +0.2
2,082,500 + CA264_08910 0.88 +0.9
2,082,501 - CA264_08910 0.88 -1.2
2,082,536 - -0.2
2,082,541 + -0.5
2,082,545 + +1.2
2,082,545 + +2.9
2,082,545 + -0.7
2,082,545 + +0.1
2,082,546 - +1.1
2,082,546 - -2.3
2,082,546 - -0.8
2,082,546 - +0.2
2,082,547 + -1.0
2,082,547 + -0.4
2,082,547 + -0.7
2,082,547 + -0.5
2,082,548 - -0.3
2,082,548 - -0.2
2,082,548 - -0.4
2,082,556 - -0.3
2,082,676 + -0.4
2,082,695 + +0.2
2,082,696 - -0.4
2,082,700 - +1.0
2,082,702 - -0.1
2,082,702 - -0.2
2,082,811 - +0.3
2,082,885 - +0.6
2,082,885 - +0.9
2,082,885 - +1.1
2,082,887 + +0.5
2,082,888 - -0.9
2,082,888 - -0.3
2,082,888 - +0.2
2,082,888 - +0.1
2,082,931 + -0.1
2,082,945 - -0.2
2,083,015 + CA264_08915 0.15 -0.2
2,083,098 + CA264_08915 0.24 +0.3
2,083,140 + CA264_08915 0.28 +0.4
2,083,141 - CA264_08915 0.28 +0.3
2,083,179 - CA264_08915 0.32 -0.1
2,083,263 - CA264_08915 0.41 -0.5
2,083,302 - CA264_08915 0.45 +0.9
2,083,572 + CA264_08915 0.74 -0.1
2,083,572 + CA264_08915 0.74 -1.2
2,083,574 + CA264_08915 0.74 -0.3
2,083,575 - CA264_08915 0.74 +1.3
2,083,575 - CA264_08915 0.74 +0.8
2,083,575 - CA264_08915 0.74 +0.9
2,083,580 - CA264_08915 0.74 +1.2
2,083,580 - CA264_08915 0.74 -1.1
2,083,580 - CA264_08915 0.74 +0.2
2,083,597 - CA264_08915 0.76 +2.1
2,083,597 - CA264_08915 0.76 -0.0
2,083,610 + CA264_08915 0.78 -0.1
2,083,611 - CA264_08915 0.78 +1.9
2,083,611 - CA264_08915 0.78 -0.0
2,083,704 + CA264_08915 0.88 -0.5
2,083,704 + CA264_08915 0.88 -1.4
2,083,705 - CA264_08915 0.88 +1.0
2,083,874 + -0.2
2,083,881 - +0.1
2,083,984 - -0.6
2,084,016 + -0.7
2,084,044 - -0.7
2,084,131 + CA264_08920 0.14 -0.7
2,084,131 + CA264_08920 0.14 -0.4
2,084,189 - CA264_08920 0.23 -0.4
2,084,189 - CA264_08920 0.23 -0.8
2,084,191 + CA264_08920 0.23 +0.2
2,084,191 + CA264_08920 0.23 -0.9
2,084,191 + CA264_08920 0.23 -0.2
2,084,191 + CA264_08920 0.23 -0.5
2,084,191 + CA264_08920 0.23 -0.3
2,084,192 - CA264_08920 0.23 +0.3
2,084,192 - CA264_08920 0.23 -0.3
2,084,192 - CA264_08920 0.23 -0.3
2,084,250 + CA264_08920 0.33 -0.1
2,084,254 + CA264_08920 0.33 +1.5
2,084,254 + CA264_08920 0.33 -0.7
2,084,258 + CA264_08920 0.34 -0.5
2,084,259 - CA264_08920 0.34 +0.8
2,084,384 + CA264_08920 0.54 -1.1
2,084,384 + CA264_08920 0.54 +0.4
2,084,385 - CA264_08920 0.54 +1.1
2,084,386 + CA264_08920 0.55 -0.5
2,084,387 - CA264_08920 0.55 -0.1
2,084,413 + CA264_08920 0.59 -2.1
2,084,437 + CA264_08920 0.63 +0.9
2,084,488 + CA264_08920 0.71 +0.3
2,084,498 + CA264_08920 0.73 -0.7
2,084,768 - -0.7
2,084,776 - -0.1
2,084,794 + -0.1

Or see this region's nucleotide sequence