Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07120

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07110 and CA264_07115 are separated by 4 nucleotidesCA264_07115 and CA264_07120 are separated by 324 nucleotidesCA264_07120 and CA264_07125 are separated by 152 nucleotidesCA264_07125 and CA264_07130 are separated by 237 nucleotides CA264_07110: CA264_07110 - hypothetical protein, at 1,640,006 to 1,640,308 _07110 CA264_07115: CA264_07115 - hypothetical protein, at 1,640,313 to 1,640,813 _07115 CA264_07120: CA264_07120 - citrate (Si)-synthase, at 1,641,138 to 1,642,424 _07120 CA264_07125: CA264_07125 - 6-carboxytetrahydropterin synthase QueD, at 1,642,577 to 1,643,026 _07125 CA264_07130: CA264_07130 - hypothetical protein, at 1,643,264 to 1,645,189 _07130 Position (kb) 1641 1642 1643Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1640.278 kb on + strandat 1640.279 kb on - strandat 1640.279 kb on - strandat 1640.306 kb on + strandat 1640.314 kb on + strandat 1640.314 kb on + strandat 1640.352 kb on - strandat 1640.352 kb on - strandat 1640.352 kb on - strandat 1640.411 kb on + strand, within CA264_07115at 1640.416 kb on - strand, within CA264_07115at 1640.430 kb on + strand, within CA264_07115at 1640.440 kb on + strand, within CA264_07115at 1640.441 kb on - strand, within CA264_07115at 1640.444 kb on + strand, within CA264_07115at 1640.445 kb on - strand, within CA264_07115at 1640.477 kb on + strand, within CA264_07115at 1640.528 kb on + strand, within CA264_07115at 1640.528 kb on + strand, within CA264_07115at 1640.624 kb on + strand, within CA264_07115at 1640.624 kb on + strand, within CA264_07115at 1640.625 kb on - strand, within CA264_07115at 1640.632 kb on + strand, within CA264_07115at 1640.632 kb on + strand, within CA264_07115at 1640.633 kb on - strand, within CA264_07115at 1640.656 kb on + strand, within CA264_07115at 1640.657 kb on - strand, within CA264_07115at 1640.707 kb on + strand, within CA264_07115at 1640.708 kb on - strand, within CA264_07115at 1640.762 kb on + strand, within CA264_07115at 1640.763 kb on - strand, within CA264_07115at 1640.764 kb on + strandat 1640.764 kb on + strandat 1640.764 kb on + strandat 1640.764 kb on + strandat 1640.764 kb on + strandat 1640.764 kb on + strandat 1640.765 kb on - strandat 1640.765 kb on - strandat 1640.765 kb on - strandat 1640.765 kb on - strandat 1640.765 kb on - strandat 1640.854 kb on + strandat 1640.854 kb on + strandat 1640.855 kb on - strandat 1640.855 kb on - strandat 1640.858 kb on + strandat 1640.859 kb on - strandat 1640.865 kb on + strandat 1640.866 kb on - strandat 1640.958 kb on + strandat 1640.959 kb on - strandat 1640.959 kb on - strandat 1640.971 kb on - strandat 1640.971 kb on - strandat 1640.976 kb on - strandat 1640.998 kb on + strandat 1641.039 kb on - strandat 1641.048 kb on + strandat 1641.048 kb on + strandat 1641.049 kb on - strandat 1641.049 kb on - strandat 1641.049 kb on - strandat 1641.050 kb on + strandat 1641.050 kb on + strandat 1641.051 kb on - strandat 1641.102 kb on + strandat 1641.124 kb on - strandat 1642.402 kb on - strandat 1642.402 kb on - strandat 1642.409 kb on + strandat 1642.410 kb on - strandat 1642.435 kb on + strandat 1642.436 kb on - strandat 1642.438 kb on - strandat 1642.563 kb on + strandat 1642.564 kb on - strandat 1642.564 kb on - strandat 1642.570 kb on - strandat 1642.606 kb on + strandat 1642.637 kb on + strand, within CA264_07125at 1642.638 kb on - strand, within CA264_07125at 1642.638 kb on - strand, within CA264_07125at 1642.673 kb on + strand, within CA264_07125at 1642.673 kb on + strand, within CA264_07125at 1642.673 kb on + strand, within CA264_07125at 1642.687 kb on - strand, within CA264_07125at 1642.758 kb on + strand, within CA264_07125at 1642.785 kb on + strand, within CA264_07125at 1642.785 kb on + strand, within CA264_07125at 1642.883 kb on + strand, within CA264_07125at 1642.953 kb on + strand, within CA264_07125at 1642.954 kb on - strand, within CA264_07125at 1642.954 kb on - strand, within CA264_07125at 1642.968 kb on + strand, within CA264_07125at 1643.007 kb on - strandat 1643.069 kb on + strandat 1643.085 kb on + strandat 1643.086 kb on - strandat 1643.092 kb on - strandat 1643.152 kb on - strandat 1643.156 kb on + strandat 1643.157 kb on - strandat 1643.188 kb on + strandat 1643.188 kb on + strandat 1643.188 kb on + strandat 1643.189 kb on - strandat 1643.189 kb on - strandat 1643.189 kb on - strandat 1643.197 kb on + strandat 1643.221 kb on - strandat 1643.231 kb on - strandat 1643.236 kb on + strandat 1643.265 kb on + strandat 1643.266 kb on - strandat 1643.266 kb on - strandat 1643.346 kb on + strandat 1643.347 kb on - strandat 1643.380 kb on + strandat 1643.381 kb on - strandat 1643.394 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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1,640,278 + +0.8
1,640,279 - +1.4
1,640,279 - +1.2
1,640,306 + +0.8
1,640,314 + -0.8
1,640,314 + -1.2
1,640,352 - -0.2
1,640,352 - +0.1
1,640,352 - +0.0
1,640,411 + CA264_07115 0.20 -0.7
1,640,416 - CA264_07115 0.21 -1.5
1,640,430 + CA264_07115 0.23 -0.8
1,640,440 + CA264_07115 0.25 -0.6
1,640,441 - CA264_07115 0.26 +0.6
1,640,444 + CA264_07115 0.26 +0.8
1,640,445 - CA264_07115 0.26 -1.5
1,640,477 + CA264_07115 0.33 -1.0
1,640,528 + CA264_07115 0.43 +0.1
1,640,528 + CA264_07115 0.43 -1.0
1,640,624 + CA264_07115 0.62 -0.2
1,640,624 + CA264_07115 0.62 -1.4
1,640,625 - CA264_07115 0.62 -1.5
1,640,632 + CA264_07115 0.64 -0.5
1,640,632 + CA264_07115 0.64 +1.1
1,640,633 - CA264_07115 0.64 +1.2
1,640,656 + CA264_07115 0.68 -0.1
1,640,657 - CA264_07115 0.69 +0.8
1,640,707 + CA264_07115 0.79 -0.2
1,640,708 - CA264_07115 0.79 -0.4
1,640,762 + CA264_07115 0.90 -1.1
1,640,763 - CA264_07115 0.90 -0.3
1,640,764 + -0.3
1,640,764 + -0.8
1,640,764 + +0.2
1,640,764 + -0.9
1,640,764 + -0.2
1,640,764 + -0.3
1,640,765 - -0.1
1,640,765 - -0.9
1,640,765 - -0.5
1,640,765 - +0.4
1,640,765 - +1.5
1,640,854 + -1.0
1,640,854 + -0.4
1,640,855 - -1.6
1,640,855 - -0.4
1,640,858 + -0.9
1,640,859 - +0.4
1,640,865 + -0.3
1,640,866 - +1.1
1,640,958 + -0.3
1,640,959 - -0.5
1,640,959 - -0.1
1,640,971 - +0.1
1,640,971 - +3.4
1,640,976 - +0.0
1,640,998 + -0.6
1,641,039 - -0.2
1,641,048 + -0.8
1,641,048 + -1.2
1,641,049 - -0.4
1,641,049 - -0.6
1,641,049 - -0.9
1,641,050 + -0.1
1,641,050 + -0.8
1,641,051 - -0.2
1,641,102 + -0.5
1,641,124 - -0.2
1,642,402 - -1.2
1,642,402 - +0.2
1,642,409 + -0.1
1,642,410 - -2.9
1,642,435 + -0.4
1,642,436 - +0.5
1,642,438 - +0.8
1,642,563 + +0.2
1,642,564 - +0.8
1,642,564 - +0.6
1,642,570 - -0.9
1,642,606 + -0.2
1,642,637 + CA264_07125 0.13 +2.4
1,642,638 - CA264_07125 0.14 -1.0
1,642,638 - CA264_07125 0.14 +1.3
1,642,673 + CA264_07125 0.21 -0.3
1,642,673 + CA264_07125 0.21 -1.2
1,642,673 + CA264_07125 0.21 +0.4
1,642,687 - CA264_07125 0.24 +0.1
1,642,758 + CA264_07125 0.40 +0.1
1,642,785 + CA264_07125 0.46 -1.2
1,642,785 + CA264_07125 0.46 +0.8
1,642,883 + CA264_07125 0.68 -0.4
1,642,953 + CA264_07125 0.84 -0.4
1,642,954 - CA264_07125 0.84 -1.4
1,642,954 - CA264_07125 0.84 +0.2
1,642,968 + CA264_07125 0.87 -0.9
1,643,007 - -0.2
1,643,069 + +0.2
1,643,085 + -0.8
1,643,086 - -1.3
1,643,092 - +1.0
1,643,152 - -1.8
1,643,156 + +0.6
1,643,157 - +0.2
1,643,188 + +0.4
1,643,188 + +0.2
1,643,188 + +0.1
1,643,189 - -0.7
1,643,189 - +0.2
1,643,189 - +0.2
1,643,197 + -0.4
1,643,221 - -0.6
1,643,231 - -1.1
1,643,236 + -1.5
1,643,265 + -0.2
1,643,266 - -0.2
1,643,266 - +0.8
1,643,346 + -1.3
1,643,347 - -0.5
1,643,380 + +0.2
1,643,381 - -0.8
1,643,394 + +1.4

Or see this region's nucleotide sequence