Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06315

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06305 and CA264_06310 overlap by 4 nucleotidesCA264_06310 and CA264_06315 are separated by 2 nucleotidesCA264_06315 and CA264_06320 are separated by 62 nucleotides CA264_06305: CA264_06305 - pH homeostasis protein A, at 1,466,633 to 1,468,942 _06305 CA264_06310: CA264_06310 - cation:proton antiporter, at 1,468,939 to 1,469,481 _06310 CA264_06315: CA264_06315 - cation:proton antiporter, at 1,469,484 to 1,469,840 _06315 CA264_06320: CA264_06320 - Na+/H+ antiporter subunit D, at 1,469,903 to 1,471,420 _06320 Position (kb) 1469 1470Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1468.547 kb on + strand, within CA264_06305at 1468.650 kb on + strand, within CA264_06305at 1468.650 kb on + strand, within CA264_06305at 1468.651 kb on - strand, within CA264_06305at 1468.651 kb on - strand, within CA264_06305at 1468.651 kb on - strand, within CA264_06305at 1468.653 kb on - strand, within CA264_06305at 1468.669 kb on + strand, within CA264_06305at 1468.669 kb on + strand, within CA264_06305at 1468.721 kb on + strandat 1468.721 kb on + strandat 1468.721 kb on + strandat 1468.721 kb on + strandat 1468.722 kb on - strandat 1468.722 kb on - strandat 1468.725 kb on + strandat 1468.725 kb on + strandat 1468.726 kb on - strandat 1468.726 kb on - strandat 1468.726 kb on - strandat 1468.726 kb on - strandat 1468.772 kb on + strandat 1468.790 kb on + strandat 1468.791 kb on - strandat 1468.814 kb on - strandat 1468.866 kb on + strandat 1468.875 kb on + strandat 1469.005 kb on + strand, within CA264_06310at 1469.006 kb on - strand, within CA264_06310at 1469.110 kb on - strand, within CA264_06310at 1469.110 kb on - strand, within CA264_06310at 1469.143 kb on + strand, within CA264_06310at 1469.144 kb on - strand, within CA264_06310at 1469.144 kb on - strand, within CA264_06310at 1469.275 kb on + strand, within CA264_06310at 1469.276 kb on - strand, within CA264_06310at 1469.280 kb on - strand, within CA264_06310at 1469.344 kb on + strand, within CA264_06310at 1469.344 kb on + strand, within CA264_06310at 1469.344 kb on + strand, within CA264_06310at 1469.344 kb on + strand, within CA264_06310at 1469.344 kb on + strand, within CA264_06310at 1469.345 kb on - strand, within CA264_06310at 1469.345 kb on - strand, within CA264_06310at 1469.385 kb on - strand, within CA264_06310at 1469.451 kb on + strandat 1469.451 kb on + strandat 1469.491 kb on + strandat 1469.536 kb on - strand, within CA264_06315at 1469.542 kb on + strand, within CA264_06315at 1469.569 kb on + strand, within CA264_06315at 1469.630 kb on + strand, within CA264_06315at 1469.654 kb on - strand, within CA264_06315at 1469.685 kb on + strand, within CA264_06315at 1469.685 kb on + strand, within CA264_06315at 1469.724 kb on - strand, within CA264_06315at 1469.789 kb on + strand, within CA264_06315at 1469.790 kb on - strand, within CA264_06315at 1469.838 kb on + strandat 1469.885 kb on + strandat 1469.892 kb on - strandat 1469.902 kb on + strandat 1469.903 kb on - strandat 1469.938 kb on + strandat 1469.939 kb on - strandat 1469.948 kb on + strandat 1470.091 kb on - strand, within CA264_06320at 1470.119 kb on - strand, within CA264_06320at 1470.234 kb on - strand, within CA264_06320at 1470.305 kb on + strand, within CA264_06320at 1470.305 kb on + strand, within CA264_06320at 1470.306 kb on - strand, within CA264_06320at 1470.306 kb on - strand, within CA264_06320at 1470.306 kb on - strand, within CA264_06320at 1470.321 kb on + strand, within CA264_06320at 1470.393 kb on - strand, within CA264_06320at 1470.447 kb on + strand, within CA264_06320at 1470.447 kb on + strand, within CA264_06320at 1470.448 kb on - strand, within CA264_06320at 1470.448 kb on - strand, within CA264_06320at 1470.448 kb on - strand, within CA264_06320at 1470.448 kb on - strand, within CA264_06320at 1470.448 kb on - strand, within CA264_06320at 1470.448 kb on - strand, within CA264_06320at 1470.448 kb on - strand, within CA264_06320at 1470.449 kb on + strand, within CA264_06320at 1470.449 kb on + strand, within CA264_06320at 1470.528 kb on + strand, within CA264_06320at 1470.532 kb on + strand, within CA264_06320at 1470.533 kb on - strand, within CA264_06320at 1470.533 kb on - strand, within CA264_06320at 1470.611 kb on + strand, within CA264_06320at 1470.626 kb on - strand, within CA264_06320at 1470.643 kb on + strand, within CA264_06320at 1470.655 kb on + strand, within CA264_06320at 1470.677 kb on - strand, within CA264_06320at 1470.724 kb on + strand, within CA264_06320at 1470.725 kb on - strand, within CA264_06320at 1470.725 kb on - strand, within CA264_06320at 1470.725 kb on - strand, within CA264_06320

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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1,468,547 + CA264_06305 0.83 +0.1
1,468,650 + CA264_06305 0.87 -1.5
1,468,650 + CA264_06305 0.87 +0.8
1,468,651 - CA264_06305 0.87 -0.8
1,468,651 - CA264_06305 0.87 -0.6
1,468,651 - CA264_06305 0.87 -0.4
1,468,653 - CA264_06305 0.87 -1.4
1,468,669 + CA264_06305 0.88 -1.3
1,468,669 + CA264_06305 0.88 -1.0
1,468,721 + +0.2
1,468,721 + -1.5
1,468,721 + -0.2
1,468,721 + -0.2
1,468,722 - -0.9
1,468,722 - -0.2
1,468,725 + -0.1
1,468,725 + -1.2
1,468,726 - -0.8
1,468,726 - +0.2
1,468,726 - +0.2
1,468,726 - +0.0
1,468,772 + +0.4
1,468,790 + -1.5
1,468,791 - -0.4
1,468,814 - -0.2
1,468,866 + -0.8
1,468,875 + +0.2
1,469,005 + CA264_06310 0.12 -0.5
1,469,006 - CA264_06310 0.12 -0.5
1,469,110 - CA264_06310 0.31 -0.5
1,469,110 - CA264_06310 0.31 +0.1
1,469,143 + CA264_06310 0.38 -0.2
1,469,144 - CA264_06310 0.38 -0.9
1,469,144 - CA264_06310 0.38 -2.3
1,469,275 + CA264_06310 0.62 +0.2
1,469,276 - CA264_06310 0.62 -0.2
1,469,280 - CA264_06310 0.63 -1.0
1,469,344 + CA264_06310 0.75 -1.2
1,469,344 + CA264_06310 0.75 -1.8
1,469,344 + CA264_06310 0.75 +1.1
1,469,344 + CA264_06310 0.75 -0.7
1,469,344 + CA264_06310 0.75 -1.1
1,469,345 - CA264_06310 0.75 -1.2
1,469,345 - CA264_06310 0.75 -1.0
1,469,385 - CA264_06310 0.82 -0.9
1,469,451 + +0.2
1,469,451 + -0.5
1,469,491 + +0.4
1,469,536 - CA264_06315 0.15 +0.2
1,469,542 + CA264_06315 0.16 +0.2
1,469,569 + CA264_06315 0.24 -2.1
1,469,630 + CA264_06315 0.41 -0.7
1,469,654 - CA264_06315 0.48 -0.2
1,469,685 + CA264_06315 0.56 -1.4
1,469,685 + CA264_06315 0.56 -0.5
1,469,724 - CA264_06315 0.67 -1.7
1,469,789 + CA264_06315 0.85 -0.5
1,469,790 - CA264_06315 0.86 +0.8
1,469,838 + +0.8
1,469,885 + -0.8
1,469,892 - -0.3
1,469,902 + -0.8
1,469,903 - +0.5
1,469,938 + -0.4
1,469,939 - -0.3
1,469,948 + -2.8
1,470,091 - CA264_06320 0.12 -1.0
1,470,119 - CA264_06320 0.14 +0.7
1,470,234 - CA264_06320 0.22 +0.3
1,470,305 + CA264_06320 0.26 +0.8
1,470,305 + CA264_06320 0.26 +0.1
1,470,306 - CA264_06320 0.27 -0.3
1,470,306 - CA264_06320 0.27 +0.8
1,470,306 - CA264_06320 0.27 -0.6
1,470,321 + CA264_06320 0.28 -0.2
1,470,393 - CA264_06320 0.32 -1.5
1,470,447 + CA264_06320 0.36 -0.4
1,470,447 + CA264_06320 0.36 -0.8
1,470,448 - CA264_06320 0.36 -2.3
1,470,448 - CA264_06320 0.36 -0.1
1,470,448 - CA264_06320 0.36 -0.5
1,470,448 - CA264_06320 0.36 -0.2
1,470,448 - CA264_06320 0.36 -0.8
1,470,448 - CA264_06320 0.36 -2.0
1,470,448 - CA264_06320 0.36 -2.9
1,470,449 + CA264_06320 0.36 -1.1
1,470,449 + CA264_06320 0.36 -0.0
1,470,528 + CA264_06320 0.41 -0.5
1,470,532 + CA264_06320 0.41 -1.3
1,470,533 - CA264_06320 0.42 +0.2
1,470,533 - CA264_06320 0.42 -1.6
1,470,611 + CA264_06320 0.47 -0.4
1,470,626 - CA264_06320 0.48 -0.9
1,470,643 + CA264_06320 0.49 -0.5
1,470,655 + CA264_06320 0.50 +0.1
1,470,677 - CA264_06320 0.51 -0.6
1,470,724 + CA264_06320 0.54 +0.2
1,470,725 - CA264_06320 0.54 +1.8
1,470,725 - CA264_06320 0.54 -1.1
1,470,725 - CA264_06320 0.54 -1.2

Or see this region's nucleotide sequence