Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06140

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06135 and CA264_06140 are separated by 202 nucleotidesCA264_06140 and CA264_06145 are separated by 23 nucleotides CA264_06135: CA264_06135 - alanine--tRNA ligase, at 1,432,299 to 1,434,935 _06135 CA264_06140: CA264_06140 - MerR family transcriptional regulator, at 1,435,138 to 1,435,485 _06140 CA264_06145: CA264_06145 - DNA protecting protein DprA, at 1,435,509 to 1,436,624 _06145 Position (kb) 1435 1436Strain fitness (log2 ratio) -2 -1 0 1at 1434.947 kb on - strandat 1434.955 kb on - strandat 1434.955 kb on - strandat 1434.963 kb on - strandat 1434.971 kb on - strandat 1435.121 kb on - strandat 1435.174 kb on + strand, within CA264_06140at 1435.174 kb on + strand, within CA264_06140at 1435.174 kb on + strand, within CA264_06140at 1435.175 kb on - strand, within CA264_06140at 1435.175 kb on - strand, within CA264_06140at 1435.176 kb on + strand, within CA264_06140at 1435.177 kb on - strand, within CA264_06140at 1435.177 kb on - strand, within CA264_06140at 1435.177 kb on - strand, within CA264_06140at 1435.288 kb on + strand, within CA264_06140at 1435.318 kb on - strand, within CA264_06140at 1435.351 kb on - strand, within CA264_06140at 1435.484 kb on - strandat 1435.544 kb on + strandat 1435.545 kb on - strandat 1435.588 kb on + strandat 1435.594 kb on - strandat 1435.594 kb on - strandat 1435.750 kb on + strand, within CA264_06145at 1435.751 kb on - strand, within CA264_06145at 1435.767 kb on - strand, within CA264_06145at 1435.824 kb on + strand, within CA264_06145at 1435.864 kb on + strand, within CA264_06145at 1435.865 kb on - strand, within CA264_06145at 1435.873 kb on + strand, within CA264_06145at 1435.874 kb on - strand, within CA264_06145at 1435.889 kb on - strand, within CA264_06145at 1435.896 kb on + strand, within CA264_06145at 1435.925 kb on - strand, within CA264_06145at 1435.943 kb on + strand, within CA264_06145at 1435.944 kb on - strand, within CA264_06145at 1436.080 kb on - strand, within CA264_06145at 1436.204 kb on - strand, within CA264_06145at 1436.260 kb on - strand, within CA264_06145at 1436.352 kb on + strand, within CA264_06145at 1436.352 kb on + strand, within CA264_06145at 1436.434 kb on + strand, within CA264_06145

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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1,434,947 - +0.0
1,434,955 - +1.4
1,434,955 - +1.1
1,434,963 - -0.8
1,434,971 - +0.1
1,435,121 - +0.1
1,435,174 + CA264_06140 0.10 -0.8
1,435,174 + CA264_06140 0.10 -0.8
1,435,174 + CA264_06140 0.10 -1.4
1,435,175 - CA264_06140 0.11 -1.6
1,435,175 - CA264_06140 0.11 -1.8
1,435,176 + CA264_06140 0.11 -1.1
1,435,177 - CA264_06140 0.11 -2.0
1,435,177 - CA264_06140 0.11 -1.8
1,435,177 - CA264_06140 0.11 -0.5
1,435,288 + CA264_06140 0.43 -2.2
1,435,318 - CA264_06140 0.52 -0.6
1,435,351 - CA264_06140 0.61 -0.7
1,435,484 - -0.2
1,435,544 + +0.7
1,435,545 - +1.0
1,435,588 + +0.2
1,435,594 - +0.1
1,435,594 - -1.1
1,435,750 + CA264_06145 0.22 -1.0
1,435,751 - CA264_06145 0.22 -0.1
1,435,767 - CA264_06145 0.23 +0.5
1,435,824 + CA264_06145 0.28 -0.4
1,435,864 + CA264_06145 0.32 -0.5
1,435,865 - CA264_06145 0.32 +0.1
1,435,873 + CA264_06145 0.33 -0.2
1,435,874 - CA264_06145 0.33 +1.6
1,435,889 - CA264_06145 0.34 -0.2
1,435,896 + CA264_06145 0.35 -1.2
1,435,925 - CA264_06145 0.37 -0.4
1,435,943 + CA264_06145 0.39 -1.0
1,435,944 - CA264_06145 0.39 -1.0
1,436,080 - CA264_06145 0.51 -0.1
1,436,204 - CA264_06145 0.62 -0.7
1,436,260 - CA264_06145 0.67 -0.2
1,436,352 + CA264_06145 0.76 -1.5
1,436,352 + CA264_06145 0.76 +0.2
1,436,434 + CA264_06145 0.83 +0.1

Or see this region's nucleotide sequence