Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04650

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04640 and CA264_04645 are separated by 2 nucleotidesCA264_04645 and CA264_04650 are separated by 0 nucleotidesCA264_04650 and CA264_04655 are separated by 4 nucleotides CA264_04640: CA264_04640 - tRNA pseudouridine(55) synthase, at 1,073,854 to 1,074,552 _04640 CA264_04645: CA264_04645 - UDP-diphosphatase, at 1,074,555 to 1,075,388 _04645 CA264_04650: CA264_04650 - hypothetical protein, at 1,075,389 to 1,075,607 _04650 CA264_04655: CA264_04655 - cell division protein, at 1,075,612 to 1,076,508 _04655 Position (kb) 1075 1076Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1074.515 kb on - strandat 1074.515 kb on - strandat 1074.515 kb on - strandat 1074.517 kb on - strandat 1074.517 kb on - strandat 1074.517 kb on - strandat 1074.517 kb on - strandat 1074.517 kb on - strandat 1074.552 kb on + strandat 1074.552 kb on + strandat 1074.552 kb on + strandat 1074.556 kb on + strandat 1074.556 kb on + strandat 1074.557 kb on - strandat 1074.557 kb on - strandat 1075.403 kb on + strandat 1075.683 kb on + strandat 1075.719 kb on - strand, within CA264_04655at 1075.766 kb on + strand, within CA264_04655at 1075.767 kb on - strand, within CA264_04655at 1075.890 kb on + strand, within CA264_04655at 1075.891 kb on - strand, within CA264_04655at 1075.917 kb on - strand, within CA264_04655at 1076.046 kb on - strand, within CA264_04655at 1076.046 kb on - strand, within CA264_04655at 1076.234 kb on + strand, within CA264_04655at 1076.270 kb on + strand, within CA264_04655at 1076.270 kb on + strand, within CA264_04655at 1076.271 kb on - strand, within CA264_04655at 1076.336 kb on + strand, within CA264_04655at 1076.336 kb on + strand, within CA264_04655at 1076.336 kb on + strand, within CA264_04655at 1076.337 kb on - strand, within CA264_04655at 1076.398 kb on + strand, within CA264_04655at 1076.514 kb on - strandat 1076.514 kb on - strandat 1076.516 kb on - strandat 1076.540 kb on - strandat 1076.542 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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1,074,515 - -0.4
1,074,515 - +0.9
1,074,515 - -0.3
1,074,517 - -0.5
1,074,517 - +0.4
1,074,517 - +0.3
1,074,517 - -0.1
1,074,517 - -0.1
1,074,552 + -0.1
1,074,552 + -1.0
1,074,552 + -0.2
1,074,556 + +0.1
1,074,556 + -0.4
1,074,557 - +0.1
1,074,557 - -0.1
1,075,403 + +0.1
1,075,683 + +0.9
1,075,719 - CA264_04655 0.12 -2.0
1,075,766 + CA264_04655 0.17 -1.3
1,075,767 - CA264_04655 0.17 +0.2
1,075,890 + CA264_04655 0.31 -2.9
1,075,891 - CA264_04655 0.31 -1.9
1,075,917 - CA264_04655 0.34 -3.3
1,076,046 - CA264_04655 0.48 -1.3
1,076,046 - CA264_04655 0.48 -1.4
1,076,234 + CA264_04655 0.69 -2.0
1,076,270 + CA264_04655 0.73 -0.1
1,076,270 + CA264_04655 0.73 -2.7
1,076,271 - CA264_04655 0.73 -2.4
1,076,336 + CA264_04655 0.81 -1.5
1,076,336 + CA264_04655 0.81 -1.0
1,076,336 + CA264_04655 0.81 -0.1
1,076,337 - CA264_04655 0.81 +0.3
1,076,398 + CA264_04655 0.88 -1.3
1,076,514 - +0.5
1,076,514 - -1.7
1,076,516 - -0.2
1,076,540 - +4.1
1,076,542 - +1.5

Or see this region's nucleotide sequence