Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29290

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29280 and ABID97_RS29285 are separated by 52 nucleotidesABID97_RS29285 and ABID97_RS29290 are separated by 5 nucleotidesABID97_RS29290 and ABID97_RS29295 are separated by 10 nucleotides ABID97_RS29280: ABID97_RS29280 - extracellular solute-binding protein, at 779,804 to 780,445 _RS29280 ABID97_RS29285: ABID97_RS29285 - hypothetical protein, at 780,498 to 780,986 _RS29285 ABID97_RS29290: ABID97_RS29290 - sugar ABC transporter permease, at 780,992 to 781,867 _RS29290 ABID97_RS29295: ABID97_RS29295 - extracellular solute-binding protein, at 781,878 to 784,109 _RS29295 Position (kb) 780 781 782Strain fitness (log2 ratio) -1 0 1 2 3at 780.099 kb on - strand, within ABID97_RS29280at 780.212 kb on + strand, within ABID97_RS29280at 780.450 kb on - strandat 780.975 kb on + strandat 781.735 kb on + strand, within ABID97_RS29290at 781.739 kb on + strandat 781.740 kb on - strand, within ABID97_RS29290at 782.308 kb on - strand, within ABID97_RS29295

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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780,099 - ABID97_RS29280 0.46 +0.3
780,212 + ABID97_RS29280 0.64 +0.7
780,450 - +0.4
780,975 + +0.9
781,735 + ABID97_RS29290 0.85 +0.4
781,739 + +3.5
781,740 - ABID97_RS29290 0.85 -0.7
782,308 - ABID97_RS29295 0.19 -0.2

Or see this region's nucleotide sequence