Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28150

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28145 and ABID97_RS28150 are separated by 18 nucleotidesABID97_RS28150 and ABID97_RS28155 are separated by 117 nucleotides ABID97_RS28145: ABID97_RS28145 - methyltransferase domain-containing protein, at 547,721 to 548,533 _RS28145 ABID97_RS28150: ABID97_RS28150 - 3-deoxy-7-phosphoheptulonate synthase, at 548,552 to 549,679 _RS28150 ABID97_RS28155: ABID97_RS28155 - YihY/virulence factor BrkB family protein, at 549,797 to 550,933 _RS28155 Position (kb) 548 549 550Strain fitness (log2 ratio) -1 0 1at 547.592 kb on + strandat 547.766 kb on + strandat 547.766 kb on + strandat 547.803 kb on - strand, within ABID97_RS28145at 547.803 kb on - strand, within ABID97_RS28145at 547.923 kb on - strand, within ABID97_RS28145at 549.300 kb on + strand, within ABID97_RS28150at 549.301 kb on - strand, within ABID97_RS28150at 549.340 kb on - strand, within ABID97_RS28150at 550.111 kb on - strand, within ABID97_RS28155at 550.155 kb on + strand, within ABID97_RS28155at 550.231 kb on - strand, within ABID97_RS28155at 550.333 kb on - strand, within ABID97_RS28155

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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547,592 + +0.5
547,766 + +0.2
547,766 + -0.1
547,803 - ABID97_RS28145 0.10 +0.6
547,803 - ABID97_RS28145 0.10 -0.5
547,923 - ABID97_RS28145 0.25 +0.3
549,300 + ABID97_RS28150 0.66 +1.0
549,301 - ABID97_RS28150 0.66 -1.5
549,340 - ABID97_RS28150 0.70 -1.1
550,111 - ABID97_RS28155 0.28 -0.2
550,155 + ABID97_RS28155 0.31 -0.2
550,231 - ABID97_RS28155 0.38 -1.1
550,333 - ABID97_RS28155 0.47 -0.6

Or see this region's nucleotide sequence