Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26890 and ABID97_RS26895 are separated by 136 nucleotides ABID97_RS26895 and ABID97_RS26900 are separated by 32 nucleotides ABID97_RS26900 and ABID97_RS26905 are separated by 155 nucleotides
ABID97_RS26890: ABID97_RS26890 - 2-hydroxyacid dehydrogenase, at 301,267 to 302,220
_RS26890
ABID97_RS26895: ABID97_RS26895 - citrate synthase family protein, at 302,357 to 303,523
_RS26895
ABID97_RS26900: ABID97_RS26900 - cupin domain-containing protein, at 303,556 to 303,936
_RS26900
ABID97_RS26905: ABID97_RS26905 - nitroreductase, at 304,092 to 304,778
_RS26905
Position (kb) 302
303
304 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 302.259 kb on + strand at 302.420 kb on + strand at 302.421 kb on - strand at 302.426 kb on + strand at 302.426 kb on + strand at 302.427 kb on - strand at 302.427 kb on - strand at 302.427 kb on - strand at 302.627 kb on + strand, within ABID97_RS26895 at 302.627 kb on + strand, within ABID97_RS26895 at 303.656 kb on + strand, within ABID97_RS26900 at 304.183 kb on + strand, within ABID97_RS26905 at 304.474 kb on + strand, within ABID97_RS26905 at 304.475 kb on - strand, within ABID97_RS26905
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 302,259 + +0.2 302,420 + -0.2 302,421 - +0.1 302,426 + -2.9 302,426 + -1.2 302,427 - -0.2 302,427 - -0.4 302,427 - -0.5 302,627 + ABID97_RS26895 0.23 -0.7 302,627 + ABID97_RS26895 0.23 -0.3 303,656 + ABID97_RS26900 0.26 +0.5 304,183 + ABID97_RS26905 0.13 -0.0 304,474 + ABID97_RS26905 0.56 +0.1 304,475 - ABID97_RS26905 0.56 -2.7
Or see this region's nucleotide sequence