Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22145

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22140 and ABID97_RS22145 are separated by 11 nucleotidesABID97_RS22145 and ABID97_RS22150 are separated by 36 nucleotides ABID97_RS22140: ABID97_RS22140 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 4,585,061 to 4,587,220 _RS22140 ABID97_RS22145: ABID97_RS22145 - indolepyruvate oxidoreductase subunit beta family protein, at 4,587,232 to 4,588,848 _RS22145 ABID97_RS22150: ABID97_RS22150 - tripartite tricarboxylate transporter substrate binding protein, at 4,588,885 to 4,589,874 _RS22150 Position (kb) 4587 4588 4589Strain fitness (log2 ratio) -1 0 1at 4586.613 kb on - strand, within ABID97_RS22140at 4586.940 kb on - strand, within ABID97_RS22140at 4587.145 kb on - strandat 4587.145 kb on - strandat 4587.391 kb on + strandat 4587.394 kb on + strand, within ABID97_RS22145at 4587.394 kb on + strand, within ABID97_RS22145at 4588.039 kb on + strand, within ABID97_RS22145at 4588.282 kb on + strand, within ABID97_RS22145at 4589.368 kb on + strand, within ABID97_RS22150at 4589.368 kb on + strand, within ABID97_RS22150at 4589.369 kb on - strand, within ABID97_RS22150at 4589.369 kb on - strand, within ABID97_RS22150

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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4,586,613 - ABID97_RS22140 0.72 -1.4
4,586,940 - ABID97_RS22140 0.87 -0.2
4,587,145 - +0.6
4,587,145 - +0.4
4,587,391 + -0.5
4,587,394 + ABID97_RS22145 0.10 -0.2
4,587,394 + ABID97_RS22145 0.10 -0.8
4,588,039 + ABID97_RS22145 0.50 -0.3
4,588,282 + ABID97_RS22145 0.65 -1.0
4,589,368 + ABID97_RS22150 0.49 -0.2
4,589,368 + ABID97_RS22150 0.49 -0.1
4,589,369 - ABID97_RS22150 0.49 -0.1
4,589,369 - ABID97_RS22150 0.49 -0.0

Or see this region's nucleotide sequence