Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22140 and ABID97_RS22145 are separated by 11 nucleotides ABID97_RS22145 and ABID97_RS22150 are separated by 36 nucleotides
ABID97_RS22140: ABID97_RS22140 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 4,585,061 to 4,587,220
_RS22140
ABID97_RS22145: ABID97_RS22145 - indolepyruvate oxidoreductase subunit beta family protein, at 4,587,232 to 4,588,848
_RS22145
ABID97_RS22150: ABID97_RS22150 - tripartite tricarboxylate transporter substrate binding protein, at 4,588,885 to 4,589,874
_RS22150
Position (kb)
4587
4588
4589 Strain fitness (log2 ratio)
-1
0
1 at 4586.613 kb on - strand, within ABID97_RS22140 at 4586.940 kb on - strand, within ABID97_RS22140 at 4587.145 kb on - strand at 4587.145 kb on - strand at 4587.391 kb on + strand at 4587.394 kb on + strand, within ABID97_RS22145 at 4587.394 kb on + strand, within ABID97_RS22145 at 4588.039 kb on + strand, within ABID97_RS22145 at 4588.282 kb on + strand, within ABID97_RS22145 at 4589.368 kb on + strand, within ABID97_RS22150 at 4589.368 kb on + strand, within ABID97_RS22150 at 4589.369 kb on - strand, within ABID97_RS22150 at 4589.369 kb on - strand, within ABID97_RS22150
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 4,586,613 - ABID97_RS22140 0.72 -1.4 4,586,940 - ABID97_RS22140 0.87 -0.2 4,587,145 - +0.6 4,587,145 - +0.4 4,587,391 + -0.5 4,587,394 + ABID97_RS22145 0.10 -0.2 4,587,394 + ABID97_RS22145 0.10 -0.8 4,588,039 + ABID97_RS22145 0.50 -0.3 4,588,282 + ABID97_RS22145 0.65 -1.0 4,589,368 + ABID97_RS22150 0.49 -0.2 4,589,368 + ABID97_RS22150 0.49 -0.1 4,589,369 - ABID97_RS22150 0.49 -0.1 4,589,369 - ABID97_RS22150 0.49 -0.0
Or see this region's nucleotide sequence