Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13005

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12995 and ABID97_RS13000 are separated by 107 nucleotidesABID97_RS13000 and ABID97_RS13005 are separated by 16 nucleotidesABID97_RS13005 and ABID97_RS13010 are separated by 3 nucleotidesABID97_RS13010 and ABID97_RS13015 overlap by 4 nucleotides ABID97_RS12995: ABID97_RS12995 - hypothetical protein, at 2,699,229 to 2,699,738 _RS12995 ABID97_RS13000: ABID97_RS13000 - type VI secretion system lipoprotein TssJ, at 2,699,846 to 2,700,547 _RS13000 ABID97_RS13005: ABID97_RS13005 - type VI secretion system baseplate subunit TssK, at 2,700,564 to 2,701,952 _RS13005 ABID97_RS13010: ABID97_RS13010 - DotU family type IV/VI secretion system protein, at 2,701,956 to 2,702,630 _RS13010 ABID97_RS13015: ABID97_RS13015 - type VI secretion protein IcmF/TssM N-terminal domain-containing protein, at 2,702,627 to 2,706,433 _RS13015 Position (kb) 2700 2701 2702Strain fitness (log2 ratio) -1 0 1at 2700.276 kb on - strand, within ABID97_RS13000at 2700.356 kb on + strand, within ABID97_RS13000at 2700.784 kb on - strand, within ABID97_RS13005at 2700.867 kb on + strand, within ABID97_RS13005at 2701.245 kb on + strand, within ABID97_RS13005at 2701.246 kb on - strand, within ABID97_RS13005at 2701.539 kb on + strand, within ABID97_RS13005at 2701.539 kb on + strand, within ABID97_RS13005at 2701.539 kb on + strand, within ABID97_RS13005at 2701.540 kb on - strand, within ABID97_RS13005at 2701.654 kb on - strand, within ABID97_RS13005at 2702.302 kb on - strand, within ABID97_RS13010at 2702.763 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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2,700,276 - ABID97_RS13000 0.61 +1.5
2,700,356 + ABID97_RS13000 0.73 -0.1
2,700,784 - ABID97_RS13005 0.16 +0.5
2,700,867 + ABID97_RS13005 0.22 +1.5
2,701,245 + ABID97_RS13005 0.49 +0.1
2,701,246 - ABID97_RS13005 0.49 -1.2
2,701,539 + ABID97_RS13005 0.70 +0.3
2,701,539 + ABID97_RS13005 0.70 +0.2
2,701,539 + ABID97_RS13005 0.70 -0.0
2,701,540 - ABID97_RS13005 0.70 +0.5
2,701,654 - ABID97_RS13005 0.78 -0.2
2,702,302 - ABID97_RS13010 0.51 -1.3
2,702,763 - +0.0

Or see this region's nucleotide sequence