Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12905

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12900 and ABID97_RS12905 are separated by 17 nucleotidesABID97_RS12905 and ABID97_RS12910 overlap by 4 nucleotides ABID97_RS12900: ABID97_RS12900 - type VI secretion system protein TssA, at 2,673,748 to 2,675,316 _RS12900 ABID97_RS12905: ABID97_RS12905 - response regulator transcription factor, at 2,675,334 to 2,676,068 _RS12905 ABID97_RS12910: ABID97_RS12910 - ATP-binding protein, at 2,676,065 to 2,677,834 _RS12910 Position (kb) 2675 2676 2677Strain fitness (log2 ratio) -1 0 1 2at 2675.343 kb on + strandat 2675.344 kb on - strandat 2675.762 kb on - strand, within ABID97_RS12905at 2675.995 kb on + strandat 2675.996 kb on - strandat 2676.093 kb on - strandat 2676.978 kb on + strand, within ABID97_RS12910

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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2,675,343 + -0.7
2,675,344 - -1.3
2,675,762 - ABID97_RS12905 0.58 +0.2
2,675,995 + -0.8
2,675,996 - +0.4
2,676,093 - +2.3
2,676,978 + ABID97_RS12910 0.52 +0.6

Or see this region's nucleotide sequence