Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12665

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12655 and ABID97_RS12660 overlap by 1 nucleotidesABID97_RS12660 and ABID97_RS12665 overlap by 4 nucleotidesABID97_RS12665 and ABID97_RS12670 are separated by 31 nucleotidesABID97_RS12670 and ABID97_RS12675 are separated by 2 nucleotides ABID97_RS12655: ABID97_RS12655 - formylmethanofuran dehydrogenase subunit A, at 2,626,854 to 2,628,539 _RS12655 ABID97_RS12660: ABID97_RS12660 - formylmethanofuran--tetrahydromethanopterin N-formyltransferase, at 2,628,539 to 2,629,504 _RS12660 ABID97_RS12665: ABID97_RS12665 - formylmethanofuran dehydrogenase subunit C, at 2,629,501 to 2,630,328 _RS12665 ABID97_RS12670: ABID97_RS12670 - formaldehyde-activating enzyme, at 2,630,360 to 2,630,893 _RS12670 ABID97_RS12675: ABID97_RS12675 - aminodeoxychorismate synthase component I, at 2,630,896 to 2,632,813 _RS12675 Position (kb) 2629 2630 2631Strain fitness (log2 ratio) -1 0 1at 2628.981 kb on - strand, within ABID97_RS12660at 2629.434 kb on - strandat 2629.434 kb on - strandat 2630.049 kb on + strand, within ABID97_RS12665at 2630.695 kb on + strand, within ABID97_RS12670at 2630.696 kb on - strand, within ABID97_RS12670at 2630.771 kb on + strand, within ABID97_RS12670at 2630.771 kb on + strand, within ABID97_RS12670at 2630.772 kb on - strand, within ABID97_RS12670at 2630.772 kb on - strand, within ABID97_RS12670

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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2,628,981 - ABID97_RS12660 0.46 -0.3
2,629,434 - +0.2
2,629,434 - +0.2
2,630,049 + ABID97_RS12665 0.66 -1.0
2,630,695 + ABID97_RS12670 0.63 -0.2
2,630,696 - ABID97_RS12670 0.63 +0.6
2,630,771 + ABID97_RS12670 0.77 -0.6
2,630,771 + ABID97_RS12670 0.77 -0.3
2,630,772 - ABID97_RS12670 0.77 +0.3
2,630,772 - ABID97_RS12670 0.77 +0.1

Or see this region's nucleotide sequence