Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12655 and ABID97_RS12660 overlap by 1 nucleotides ABID97_RS12660 and ABID97_RS12665 overlap by 4 nucleotides ABID97_RS12665 and ABID97_RS12670 are separated by 31 nucleotides ABID97_RS12670 and ABID97_RS12675 are separated by 2 nucleotides
ABID97_RS12655: ABID97_RS12655 - formylmethanofuran dehydrogenase subunit A, at 2,626,854 to 2,628,539
_RS12655
ABID97_RS12660: ABID97_RS12660 - formylmethanofuran--tetrahydromethanopterin N-formyltransferase, at 2,628,539 to 2,629,504
_RS12660
ABID97_RS12665: ABID97_RS12665 - formylmethanofuran dehydrogenase subunit C, at 2,629,501 to 2,630,328
_RS12665
ABID97_RS12670: ABID97_RS12670 - formaldehyde-activating enzyme, at 2,630,360 to 2,630,893
_RS12670
ABID97_RS12675: ABID97_RS12675 - aminodeoxychorismate synthase component I, at 2,630,896 to 2,632,813
_RS12675
Position (kb)
2629
2630
2631 Strain fitness (log2 ratio)
-1
0
1 at 2628.981 kb on - strand, within ABID97_RS12660 at 2629.434 kb on - strand at 2629.434 kb on - strand at 2630.049 kb on + strand, within ABID97_RS12665 at 2630.695 kb on + strand, within ABID97_RS12670 at 2630.696 kb on - strand, within ABID97_RS12670 at 2630.771 kb on + strand, within ABID97_RS12670 at 2630.771 kb on + strand, within ABID97_RS12670 at 2630.772 kb on - strand, within ABID97_RS12670 at 2630.772 kb on - strand, within ABID97_RS12670
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 2,628,981 - ABID97_RS12660 0.46 -0.3 2,629,434 - +0.2 2,629,434 - +0.2 2,630,049 + ABID97_RS12665 0.66 -1.0 2,630,695 + ABID97_RS12670 0.63 -0.2 2,630,696 - ABID97_RS12670 0.63 +0.6 2,630,771 + ABID97_RS12670 0.77 -0.6 2,630,771 + ABID97_RS12670 0.77 -0.3 2,630,772 - ABID97_RS12670 0.77 +0.3 2,630,772 - ABID97_RS12670 0.77 +0.1
Or see this region's nucleotide sequence