Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09705

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09700 and ABID97_RS09705 are separated by 49 nucleotidesABID97_RS09705 and ABID97_RS09710 are separated by 36 nucleotidesABID97_RS09710 and ABID97_RS09715 overlap by 74 nucleotidesABID97_RS09715 and ABID97_RS09720 overlap by 4 nucleotides ABID97_RS09700: ABID97_RS09700 - phage major capsid protein, at 2,026,995 to 2,028,455 _RS09700 ABID97_RS09705: ABID97_RS09705 - hypothetical protein, at 2,028,505 to 2,028,954 _RS09705 ABID97_RS09710: ABID97_RS09710 - hypothetical protein, at 2,028,991 to 2,029,308 _RS09710 ABID97_RS09715: ABID97_RS09715 - hypothetical protein, at 2,029,235 to 2,029,756 _RS09715 ABID97_RS09720: ABID97_RS09720 - hypothetical protein, at 2,029,753 to 2,030,421 _RS09720 Position (kb) 2028 2029Strain fitness (log2 ratio) -1 0 1at 2027.533 kb on - strand, within ABID97_RS09700at 2027.533 kb on - strand, within ABID97_RS09700at 2028.013 kb on - strand, within ABID97_RS09700at 2028.034 kb on - strand, within ABID97_RS09700at 2028.148 kb on - strand, within ABID97_RS09700at 2028.336 kb on + strandat 2028.337 kb on - strandat 2028.592 kb on + strand, within ABID97_RS09705at 2028.593 kb on - strand, within ABID97_RS09705at 2029.392 kb on + strand, within ABID97_RS09715at 2029.641 kb on + strand, within ABID97_RS09715at 2029.642 kb on - strand, within ABID97_RS09715

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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2,027,533 - ABID97_RS09700 0.37 -0.1
2,027,533 - ABID97_RS09700 0.37 +0.0
2,028,013 - ABID97_RS09700 0.70 +0.3
2,028,034 - ABID97_RS09700 0.71 -0.5
2,028,148 - ABID97_RS09700 0.79 -0.3
2,028,336 + -0.7
2,028,337 - +0.3
2,028,592 + ABID97_RS09705 0.19 -1.2
2,028,593 - ABID97_RS09705 0.20 -0.3
2,029,392 + ABID97_RS09715 0.30 -0.1
2,029,641 + ABID97_RS09715 0.78 -0.1
2,029,642 - ABID97_RS09715 0.78 -0.1

Or see this region's nucleotide sequence