Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09700 and ABID97_RS09705 are separated by 49 nucleotides ABID97_RS09705 and ABID97_RS09710 are separated by 36 nucleotides ABID97_RS09710 and ABID97_RS09715 overlap by 74 nucleotides ABID97_RS09715 and ABID97_RS09720 overlap by 4 nucleotides
ABID97_RS09700: ABID97_RS09700 - phage major capsid protein, at 2,026,995 to 2,028,455
_RS09700
ABID97_RS09705: ABID97_RS09705 - hypothetical protein, at 2,028,505 to 2,028,954
_RS09705
ABID97_RS09710: ABID97_RS09710 - hypothetical protein, at 2,028,991 to 2,029,308
_RS09710
ABID97_RS09715: ABID97_RS09715 - hypothetical protein, at 2,029,235 to 2,029,756
_RS09715
ABID97_RS09720: ABID97_RS09720 - hypothetical protein, at 2,029,753 to 2,030,421
_RS09720
Position (kb)
2028
2029 Strain fitness (log2 ratio)
-1
0
1 at 2027.533 kb on - strand, within ABID97_RS09700 at 2027.533 kb on - strand, within ABID97_RS09700 at 2028.013 kb on - strand, within ABID97_RS09700 at 2028.034 kb on - strand, within ABID97_RS09700 at 2028.148 kb on - strand, within ABID97_RS09700 at 2028.336 kb on + strand at 2028.337 kb on - strand at 2028.592 kb on + strand, within ABID97_RS09705 at 2028.593 kb on - strand, within ABID97_RS09705 at 2029.392 kb on + strand, within ABID97_RS09715 at 2029.641 kb on + strand, within ABID97_RS09715 at 2029.642 kb on - strand, within ABID97_RS09715
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 2,027,533 - ABID97_RS09700 0.37 -0.1 2,027,533 - ABID97_RS09700 0.37 +0.0 2,028,013 - ABID97_RS09700 0.70 +0.3 2,028,034 - ABID97_RS09700 0.71 -0.5 2,028,148 - ABID97_RS09700 0.79 -0.3 2,028,336 + -0.7 2,028,337 - +0.3 2,028,592 + ABID97_RS09705 0.19 -1.2 2,028,593 - ABID97_RS09705 0.20 -0.3 2,029,392 + ABID97_RS09715 0.30 -0.1 2,029,641 + ABID97_RS09715 0.78 -0.1 2,029,642 - ABID97_RS09715 0.78 -0.1
Or see this region's nucleotide sequence