Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09360 and ABID97_RS09365 overlap by 4 nucleotides ABID97_RS09365 and ABID97_RS09370 are separated by 96 nucleotides ABID97_RS09370 and ABID97_RS09375 overlap by 4 nucleotides
ABID97_RS09360: ABID97_RS09360 - Zn-dependent hydrolase, at 1,967,593 to 1,968,849
_RS09360
ABID97_RS09365: ABID97_RS09365 - M81 family metallopeptidase, at 1,968,846 to 1,970,318
_RS09365
ABID97_RS09370: ABID97_RS09370 - ABC transporter permease, at 1,970,415 to 1,971,173
_RS09370
ABID97_RS09375: ABID97_RS09375 - ATP-binding cassette domain-containing protein, at 1,971,170 to 1,971,889
_RS09375
Position (kb) 1968
1969
1970
1971 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1967.890 kb on + strand, within ABID97_RS09360 at 1968.164 kb on - strand, within ABID97_RS09360 at 1968.253 kb on + strand, within ABID97_RS09360 at 1968.253 kb on + strand, within ABID97_RS09360 at 1968.416 kb on - strand, within ABID97_RS09360 at 1968.578 kb on - strand, within ABID97_RS09360 at 1968.691 kb on + strand, within ABID97_RS09360 at 1969.083 kb on + strand, within ABID97_RS09365 at 1969.332 kb on + strand, within ABID97_RS09365 at 1969.332 kb on + strand, within ABID97_RS09365 at 1969.332 kb on + strand, within ABID97_RS09365 at 1969.662 kb on + strand, within ABID97_RS09365 at 1970.020 kb on - strand, within ABID97_RS09365 at 1970.184 kb on + strand at 1970.185 kb on - strand at 1970.185 kb on - strand at 1970.185 kb on - strand at 1970.341 kb on + strand at 1970.342 kb on - strand at 1970.342 kb on - strand at 1970.372 kb on - strand at 1970.381 kb on + strand at 1970.875 kb on - strand, within ABID97_RS09370 at 1971.163 kb on + strand at 1971.222 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 1,967,890 + ABID97_RS09360 0.24 -0.4 1,968,164 - ABID97_RS09360 0.45 -0.1 1,968,253 + ABID97_RS09360 0.53 -0.1 1,968,253 + ABID97_RS09360 0.53 -0.2 1,968,416 - ABID97_RS09360 0.65 +1.0 1,968,578 - ABID97_RS09360 0.78 -2.0 1,968,691 + ABID97_RS09360 0.87 -1.7 1,969,083 + ABID97_RS09365 0.16 -0.1 1,969,332 + ABID97_RS09365 0.33 -0.2 1,969,332 + ABID97_RS09365 0.33 -0.3 1,969,332 + ABID97_RS09365 0.33 -0.4 1,969,662 + ABID97_RS09365 0.55 -0.0 1,970,020 - ABID97_RS09365 0.80 -1.4 1,970,184 + +0.0 1,970,185 - +0.4 1,970,185 - +1.9 1,970,185 - +0.2 1,970,341 + +0.3 1,970,342 - +0.2 1,970,342 - -0.1 1,970,372 - +0.1 1,970,381 + +0.0 1,970,875 - ABID97_RS09370 0.61 +0.3 1,971,163 + +0.3 1,971,222 - +0.4
Or see this region's nucleotide sequence