Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08495

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08485 and ABID97_RS08490 are separated by 18 nucleotidesABID97_RS08490 and ABID97_RS08495 are separated by 27 nucleotidesABID97_RS08495 and ABID97_RS08500 are separated by 13 nucleotidesABID97_RS08500 and ABID97_RS08505 are separated by 13 nucleotides ABID97_RS08485: ABID97_RS08485 - succinate dehydrogenase assembly factor 2, at 1,782,837 to 1,783,160 _RS08485 ABID97_RS08490: ABID97_RS08490 - succinate dehydrogenase iron-sulfur subunit, at 1,783,179 to 1,783,880 _RS08490 ABID97_RS08495: ABID97_RS08495 - succinate dehydrogenase flavoprotein subunit, at 1,783,908 to 1,785,716 _RS08495 ABID97_RS08500: ABID97_RS08500 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 1,785,730 to 1,786,095 _RS08500 ABID97_RS08505: ABID97_RS08505 - succinate dehydrogenase, cytochrome b556 subunit, at 1,786,109 to 1,786,555 _RS08505 Position (kb) 1783 1784 1785 1786Strain fitness (log2 ratio) -2 -1 0 1at 1783.910 kb on - strandat 1783.910 kb on - strandat 1783.910 kb on - strandat 1783.910 kb on - strandat 1783.910 kb on - strandat 1786.114 kb on - strandat 1786.649 kb on - strandat 1786.710 kb on + strandat 1786.710 kb on + strandat 1786.710 kb on + strandat 1786.710 kb on + strandat 1786.711 kb on - strandat 1786.711 kb on - strandat 1786.711 kb on - strandat 1786.711 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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1,783,910 - -1.4
1,783,910 - -1.3
1,783,910 - -1.1
1,783,910 - -0.3
1,783,910 - +0.3
1,786,114 - -0.6
1,786,649 - -1.1
1,786,710 + +0.0
1,786,710 + -0.3
1,786,710 + +0.6
1,786,710 + +0.9
1,786,711 - +0.1
1,786,711 - -0.2
1,786,711 - -1.9
1,786,711 - -1.1

Or see this region's nucleotide sequence