Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01280 and ABID97_RS01285 are separated by 37 nucleotides ABID97_RS01285 and ABID97_RS01290 are separated by 9 nucleotides ABID97_RS01290 and ABID97_RS01295 are separated by 12 nucleotides ABID97_RS01295 and ABID97_RS01300 overlap by 4 nucleotides
ABID97_RS01280: ABID97_RS01280 - flavodoxin family protein, at 262,252 to 262,839
_RS01280
ABID97_RS01285: ABID97_RS01285 - fumarylacetoacetate hydrolase family protein, at 262,877 to 263,782
_RS01285
ABID97_RS01290: ABID97_RS01290 - aldehyde dehydrogenase family protein, at 263,792 to 265,321
_RS01290
ABID97_RS01295: ABID97_RS01295 - cupin domain-containing protein, at 265,334 to 265,759
_RS01295
ABID97_RS01300: ABID97_RS01300 - ribonuclease activity regulator RraA, at 265,756 to 266,526
_RS01300
Position (kb) 263
264
265
266 Strain fitness (log2 ratio) -1
0
1
2 at 262.893 kb on + strand at 262.894 kb on - strand at 263.279 kb on - strand, within ABID97_RS01285 at 263.862 kb on + strand at 264.108 kb on + strand, within ABID97_RS01290 at 264.108 kb on + strand, within ABID97_RS01290 at 264.108 kb on + strand, within ABID97_RS01290 at 264.109 kb on - strand, within ABID97_RS01290 at 264.186 kb on + strand, within ABID97_RS01290 at 264.418 kb on + strand, within ABID97_RS01290 at 264.419 kb on - strand, within ABID97_RS01290 at 264.531 kb on + strand, within ABID97_RS01290 at 264.532 kb on - strand, within ABID97_RS01290 at 264.532 kb on - strand, within ABID97_RS01290 at 264.532 kb on - strand, within ABID97_RS01290 at 264.876 kb on + strand, within ABID97_RS01290 at 264.918 kb on + strand, within ABID97_RS01290 at 264.918 kb on + strand, within ABID97_RS01290 at 264.919 kb on - strand, within ABID97_RS01290 at 265.396 kb on - strand, within ABID97_RS01295 at 265.411 kb on - strand, within ABID97_RS01295 at 265.479 kb on + strand, within ABID97_RS01295 at 265.524 kb on + strand, within ABID97_RS01295 at 265.542 kb on + strand, within ABID97_RS01295 at 265.542 kb on + strand, within ABID97_RS01295 at 265.543 kb on - strand, within ABID97_RS01295 at 265.650 kb on + strand, within ABID97_RS01295 at 265.666 kb on - strand, within ABID97_RS01295 at 265.806 kb on - strand at 265.889 kb on + strand, within ABID97_RS01300 at 265.890 kb on - strand, within ABID97_RS01300 at 265.989 kb on - strand, within ABID97_RS01300 at 265.989 kb on - strand, within ABID97_RS01300 at 265.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 262,893 + -1.4 262,894 - +0.4 263,279 - ABID97_RS01285 0.44 +2.2 263,862 + +2.3 264,108 + ABID97_RS01290 0.21 -0.2 264,108 + ABID97_RS01290 0.21 -0.4 264,108 + ABID97_RS01290 0.21 +0.2 264,109 - ABID97_RS01290 0.21 -0.6 264,186 + ABID97_RS01290 0.26 -0.3 264,418 + ABID97_RS01290 0.41 -0.9 264,419 - ABID97_RS01290 0.41 -0.3 264,531 + ABID97_RS01290 0.48 -0.3 264,532 - ABID97_RS01290 0.48 -1.0 264,532 - ABID97_RS01290 0.48 +0.3 264,532 - ABID97_RS01290 0.48 -0.2 264,876 + ABID97_RS01290 0.71 +0.4 264,918 + ABID97_RS01290 0.74 +0.1 264,918 + ABID97_RS01290 0.74 -0.5 264,919 - ABID97_RS01290 0.74 -1.4 265,396 - ABID97_RS01295 0.15 +0.1 265,411 - ABID97_RS01295 0.18 -0.2 265,479 + ABID97_RS01295 0.34 -1.1 265,524 + ABID97_RS01295 0.45 -0.0 265,542 + ABID97_RS01295 0.49 -0.1 265,542 + ABID97_RS01295 0.49 -0.1 265,543 - ABID97_RS01295 0.49 -0.5 265,650 + ABID97_RS01295 0.74 +0.1 265,666 - ABID97_RS01295 0.78 +1.7 265,806 - +0.5 265,889 + ABID97_RS01300 0.17 -0.5 265,890 - ABID97_RS01300 0.17 +0.3 265,989 - ABID97_RS01300 0.30 +0.2 265,989 - ABID97_RS01300 0.30 +0.1 265,989 - +1.0
Or see this region's nucleotide sequence