Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00725 and ABID97_RS00730 are separated by 90 nucleotides ABID97_RS00730 and ABID97_RS00735 are separated by 247 nucleotides ABID97_RS00735 and ABID97_RS00740 are separated by 40 nucleotides ABID97_RS00740 and ABID97_RS00745 are separated by 51 nucleotides
ABID97_RS00725: ABID97_RS00725 - magnesium transporter CorA family protein, at 144,531 to 145,691
_RS00725
ABID97_RS00730: ABID97_RS00730 - DUF4148 domain-containing protein, at 145,782 to 146,150
_RS00730
ABID97_RS00735: ABID97_RS00735 - LysR family transcriptional regulator, at 146,398 to 147,303
_RS00735
ABID97_RS00740: ABID97_RS00740 - dienelactone hydrolase family protein, at 147,344 to 148,027
_RS00740
ABID97_RS00745: ABID97_RS00745 - 2-hydroxychromene-2-carboxylate isomerase, at 148,079 to 148,684
_RS00745
Position (kb) 146
147
148 Strain fitness (log2 ratio) -2
-1
0
1
2 at 145.783 kb on + strand at 145.783 kb on + strand at 145.783 kb on + strand at 145.783 kb on + strand at 146.077 kb on + strand, within ABID97_RS00730 at 146.078 kb on - strand, within ABID97_RS00730 at 146.274 kb on + strand at 146.275 kb on - strand at 146.503 kb on + strand, within ABID97_RS00735 at 146.503 kb on + strand, within ABID97_RS00735 at 146.504 kb on - strand, within ABID97_RS00735 at 146.746 kb on + strand, within ABID97_RS00735 at 146.746 kb on + strand, within ABID97_RS00735 at 146.746 kb on + strand, within ABID97_RS00735 at 146.747 kb on - strand, within ABID97_RS00735 at 146.749 kb on + strand, within ABID97_RS00735 at 146.750 kb on - strand, within ABID97_RS00735 at 146.908 kb on + strand, within ABID97_RS00735 at 147.110 kb on - strand, within ABID97_RS00735 at 147.110 kb on - strand, within ABID97_RS00735 at 147.110 kb on - strand, within ABID97_RS00735 at 147.110 kb on - strand, within ABID97_RS00735 at 147.260 kb on + strand at 147.260 kb on + strand at 147.260 kb on + strand at 147.330 kb on - strand at 147.330 kb on - strand at 147.411 kb on + strand at 147.411 kb on + strand at 147.411 kb on + strand at 147.412 kb on - strand at 147.412 kb on - strand at 147.454 kb on - strand, within ABID97_RS00740 at 147.454 kb on - strand, within ABID97_RS00740 at 147.454 kb on - strand, within ABID97_RS00740 at 147.600 kb on + strand, within ABID97_RS00740 at 147.600 kb on + strand, within ABID97_RS00740 at 147.603 kb on + strand, within ABID97_RS00740 at 147.603 kb on + strand, within ABID97_RS00740 at 147.604 kb on - strand, within ABID97_RS00740 at 147.604 kb on - strand, within ABID97_RS00740 at 147.673 kb on - strand, within ABID97_RS00740 at 147.709 kb on - strand, within ABID97_RS00740 at 147.807 kb on + strand, within ABID97_RS00740 at 147.807 kb on + strand, within ABID97_RS00740 at 147.865 kb on - strand, within ABID97_RS00740 at 147.865 kb on - strand, within ABID97_RS00740 at 147.880 kb on - strand, within ABID97_RS00740 at 147.975 kb on + strand at 147.975 kb on + strand at 147.976 kb on - strand at 147.976 kb on - strand at 147.976 kb on - strand at 148.136 kb on + strand at 148.137 kb on - strand at 148.137 kb on - strand at 148.155 kb on + strand, within ABID97_RS00745 at 148.155 kb on + strand, within ABID97_RS00745 at 148.155 kb on + strand, within ABID97_RS00745 at 148.155 kb on + strand, within ABID97_RS00745 at 148.155 kb on + strand, within ABID97_RS00745 at 148.155 kb on + strand, within ABID97_RS00745 at 148.156 kb on - strand, within ABID97_RS00745 at 148.156 kb on - strand, within ABID97_RS00745 at 148.156 kb on - strand, within ABID97_RS00745 at 148.156 kb on - strand, within ABID97_RS00745 at 148.156 kb on - strand, within ABID97_RS00745 at 148.200 kb on + strand, within ABID97_RS00745 at 148.200 kb on + strand, within ABID97_RS00745 at 148.201 kb on - strand, within ABID97_RS00745 at 148.201 kb on - strand, within ABID97_RS00745 at 148.209 kb on + strand, within ABID97_RS00745
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 145,783 + +0.8 145,783 + +0.7 145,783 + -0.3 145,783 + -0.3 146,077 + ABID97_RS00730 0.80 -0.3 146,078 - ABID97_RS00730 0.80 -0.7 146,274 + +0.3 146,275 - +0.2 146,503 + ABID97_RS00735 0.12 -0.3 146,503 + ABID97_RS00735 0.12 -0.4 146,504 - ABID97_RS00735 0.12 +0.1 146,746 + ABID97_RS00735 0.38 -1.3 146,746 + ABID97_RS00735 0.38 -0.5 146,746 + ABID97_RS00735 0.38 +0.1 146,747 - ABID97_RS00735 0.39 -0.9 146,749 + ABID97_RS00735 0.39 +0.0 146,750 - ABID97_RS00735 0.39 -0.1 146,908 + ABID97_RS00735 0.56 -1.2 147,110 - ABID97_RS00735 0.79 -0.7 147,110 - ABID97_RS00735 0.79 -0.2 147,110 - ABID97_RS00735 0.79 +0.0 147,110 - ABID97_RS00735 0.79 -0.3 147,260 + -1.0 147,260 + +0.3 147,260 + +0.1 147,330 - -0.1 147,330 - +0.4 147,411 + -0.5 147,411 + -0.1 147,411 + -0.5 147,412 - +0.0 147,412 - -0.2 147,454 - ABID97_RS00740 0.16 +0.5 147,454 - ABID97_RS00740 0.16 -2.4 147,454 - ABID97_RS00740 0.16 -0.6 147,600 + ABID97_RS00740 0.37 +0.5 147,600 + ABID97_RS00740 0.37 -1.4 147,603 + ABID97_RS00740 0.38 +1.1 147,603 + ABID97_RS00740 0.38 +0.7 147,604 - ABID97_RS00740 0.38 -0.6 147,604 - ABID97_RS00740 0.38 -0.5 147,673 - ABID97_RS00740 0.48 -0.4 147,709 - ABID97_RS00740 0.53 -0.3 147,807 + ABID97_RS00740 0.68 +2.4 147,807 + ABID97_RS00740 0.68 -0.2 147,865 - ABID97_RS00740 0.76 -0.9 147,865 - ABID97_RS00740 0.76 -0.7 147,880 - ABID97_RS00740 0.78 -0.4 147,975 + -0.6 147,975 + -0.1 147,976 - -1.3 147,976 - +0.2 147,976 - -0.0 148,136 + +1.0 148,137 - -0.2 148,137 - +0.3 148,155 + ABID97_RS00745 0.13 +0.2 148,155 + ABID97_RS00745 0.13 -0.7 148,155 + ABID97_RS00745 0.13 -0.6 148,155 + ABID97_RS00745 0.13 +0.2 148,155 + ABID97_RS00745 0.13 -0.3 148,155 + ABID97_RS00745 0.13 -0.7 148,156 - ABID97_RS00745 0.13 -0.2 148,156 - ABID97_RS00745 0.13 -0.3 148,156 - ABID97_RS00745 0.13 -1.4 148,156 - ABID97_RS00745 0.13 -0.3 148,156 - ABID97_RS00745 0.13 -0.2 148,200 + ABID97_RS00745 0.20 +0.7 148,200 + ABID97_RS00745 0.20 +0.9 148,201 - ABID97_RS00745 0.20 +0.7 148,201 - ABID97_RS00745 0.20 +0.0 148,209 + ABID97_RS00745 0.21 -0.6
Or see this region's nucleotide sequence