Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00305 and ABID97_RS00310 are separated by 300 nucleotides ABID97_RS00310 and ABID97_RS00315 are separated by 43 nucleotides ABID97_RS00315 and ABID97_RS00320 are separated by 176 nucleotides
ABID97_RS00305: ABID97_RS00305 - RNA-directed DNA polymerase, at 66,303 to 70,127
_RS00305
ABID97_RS00310: ABID97_RS00310 - tRNA-Arg, at 70,428 to 70,502
_RS00310
ABID97_RS00315: ABID97_RS00315 - TetR family transcriptional regulator, at 70,546 to 71,220
_RS00315
ABID97_RS00320: ABID97_RS00320 - efflux RND transporter periplasmic adaptor subunit, at 71,397 to 72,686
_RS00320
Position (kb) 70
71
72 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 69.557 kb on - strand, within ABID97_RS00305 at 69.566 kb on - strand, within ABID97_RS00305 at 69.577 kb on + strand, within ABID97_RS00305 at 69.577 kb on + strand, within ABID97_RS00305 at 69.577 kb on + strand, within ABID97_RS00305 at 69.577 kb on + strand, within ABID97_RS00305 at 69.578 kb on - strand, within ABID97_RS00305 at 69.578 kb on - strand, within ABID97_RS00305 at 69.586 kb on + strand, within ABID97_RS00305 at 69.586 kb on + strand, within ABID97_RS00305 at 69.586 kb on + strand, within ABID97_RS00305 at 69.586 kb on + strand, within ABID97_RS00305 at 69.587 kb on - strand, within ABID97_RS00305 at 69.587 kb on - strand, within ABID97_RS00305 at 69.653 kb on + strand, within ABID97_RS00305 at 69.654 kb on - strand, within ABID97_RS00305 at 69.654 kb on - strand, within ABID97_RS00305 at 69.654 kb on - strand, within ABID97_RS00305 at 69.654 kb on - strand, within ABID97_RS00305 at 69.662 kb on - strand, within ABID97_RS00305 at 69.662 kb on - strand, within ABID97_RS00305 at 69.662 kb on - strand, within ABID97_RS00305 at 69.675 kb on - strand, within ABID97_RS00305 at 69.919 kb on + strand at 69.919 kb on + strand at 69.919 kb on + strand at 69.920 kb on - strand at 69.920 kb on - strand at 69.920 kb on - strand at 69.954 kb on + strand at 69.954 kb on + strand at 69.955 kb on - strand at 69.955 kb on - strand at 69.955 kb on - strand at 70.007 kb on - strand at 70.015 kb on + strand at 70.025 kb on + strand at 70.026 kb on - strand at 70.026 kb on - strand at 70.094 kb on + strand at 70.094 kb on + strand at 70.095 kb on + strand at 70.095 kb on + strand at 70.096 kb on - strand at 70.096 kb on - strand at 70.105 kb on + strand at 70.139 kb on - strand at 70.162 kb on - strand at 70.163 kb on + strand at 70.164 kb on - strand at 70.207 kb on + strand at 70.207 kb on + strand at 70.207 kb on + strand at 70.208 kb on - strand at 70.208 kb on - strand at 70.228 kb on + strand at 70.320 kb on - strand at 70.538 kb on - strand at 70.538 kb on - strand at 70.626 kb on - strand, within ABID97_RS00315 at 70.626 kb on - strand, within ABID97_RS00315 at 70.862 kb on + strand, within ABID97_RS00315 at 70.862 kb on + strand, within ABID97_RS00315 at 70.862 kb on + strand, within ABID97_RS00315 at 70.862 kb on + strand, within ABID97_RS00315 at 70.863 kb on - strand, within ABID97_RS00315 at 70.863 kb on - strand, within ABID97_RS00315 at 71.072 kb on + strand, within ABID97_RS00315 at 71.072 kb on + strand, within ABID97_RS00315 at 71.072 kb on + strand, within ABID97_RS00315 at 71.072 kb on + strand, within ABID97_RS00315 at 71.072 kb on + strand, within ABID97_RS00315 at 71.072 kb on + strand, within ABID97_RS00315 at 71.072 kb on + strand, within ABID97_RS00315 at 71.073 kb on - strand, within ABID97_RS00315 at 71.073 kb on - strand, within ABID97_RS00315 at 71.073 kb on - strand, within ABID97_RS00315 at 71.205 kb on + strand at 71.205 kb on + strand at 71.282 kb on + strand at 71.282 kb on + strand at 71.283 kb on - strand at 71.283 kb on - strand at 71.296 kb on + strand at 71.297 kb on - strand at 71.300 kb on + strand at 71.305 kb on + strand at 71.334 kb on + strand at 71.334 kb on + strand at 71.335 kb on - strand at 71.335 kb on - strand at 71.335 kb on - strand at 71.335 kb on - strand at 71.820 kb on + strand, within ABID97_RS00320 at 71.820 kb on + strand, within ABID97_RS00320 at 71.821 kb on - strand, within ABID97_RS00320 at 71.821 kb on - strand, within ABID97_RS00320 at 71.952 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.138 kb on + strand, within ABID97_RS00320 at 72.139 kb on - strand, within ABID97_RS00320 at 72.139 kb on - strand, within ABID97_RS00320 at 72.201 kb on + strand, within ABID97_RS00320
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 69,557 - ABID97_RS00305 0.85 -0.6 69,566 - ABID97_RS00305 0.85 -0.2 69,577 + ABID97_RS00305 0.86 -1.7 69,577 + ABID97_RS00305 0.86 +0.2 69,577 + ABID97_RS00305 0.86 +0.2 69,577 + ABID97_RS00305 0.86 +0.1 69,578 - ABID97_RS00305 0.86 -1.0 69,578 - ABID97_RS00305 0.86 -0.2 69,586 + ABID97_RS00305 0.86 -0.1 69,586 + ABID97_RS00305 0.86 +0.1 69,586 + ABID97_RS00305 0.86 -0.2 69,586 + ABID97_RS00305 0.86 +1.3 69,587 - ABID97_RS00305 0.86 +0.5 69,587 - ABID97_RS00305 0.86 -0.3 69,653 + ABID97_RS00305 0.88 -1.6 69,654 - ABID97_RS00305 0.88 -0.4 69,654 - ABID97_RS00305 0.88 -0.4 69,654 - ABID97_RS00305 0.88 +0.8 69,654 - ABID97_RS00305 0.88 -0.3 69,662 - ABID97_RS00305 0.88 +0.4 69,662 - ABID97_RS00305 0.88 +0.8 69,662 - ABID97_RS00305 0.88 -0.4 69,675 - ABID97_RS00305 0.88 +0.0 69,919 + -0.5 69,919 + -0.1 69,919 + -0.0 69,920 - -0.2 69,920 - -0.0 69,920 - -0.3 69,954 + +0.4 69,954 + +0.3 69,955 - +0.1 69,955 - -0.1 69,955 - -0.1 70,007 - +0.3 70,015 + +0.6 70,025 + +0.3 70,026 - -0.6 70,026 - -0.6 70,094 + +0.1 70,094 + +0.6 70,095 + +0.5 70,095 + -0.4 70,096 - -0.4 70,096 - +0.1 70,105 + +0.3 70,139 - -0.1 70,162 - +0.4 70,163 + +0.4 70,164 - +1.6 70,207 + +0.4 70,207 + -0.5 70,207 + -0.3 70,208 - -0.1 70,208 - +0.2 70,228 + -0.1 70,320 - +1.7 70,538 - +0.9 70,538 - +0.3 70,626 - ABID97_RS00315 0.12 -0.1 70,626 - ABID97_RS00315 0.12 -0.5 70,862 + ABID97_RS00315 0.47 -0.8 70,862 + ABID97_RS00315 0.47 -0.3 70,862 + ABID97_RS00315 0.47 -0.4 70,862 + ABID97_RS00315 0.47 -0.0 70,863 - ABID97_RS00315 0.47 -1.4 70,863 - ABID97_RS00315 0.47 +0.0 71,072 + ABID97_RS00315 0.78 -0.2 71,072 + ABID97_RS00315 0.78 -2.8 71,072 + ABID97_RS00315 0.78 +0.1 71,072 + ABID97_RS00315 0.78 -0.3 71,072 + ABID97_RS00315 0.78 -0.2 71,072 + ABID97_RS00315 0.78 -1.2 71,072 + ABID97_RS00315 0.78 -0.2 71,073 - ABID97_RS00315 0.78 +0.4 71,073 - ABID97_RS00315 0.78 -0.7 71,073 - ABID97_RS00315 0.78 -0.4 71,205 + +0.1 71,205 + -0.4 71,282 + -0.5 71,282 + -0.1 71,283 - +1.8 71,283 - +0.2 71,296 + +0.2 71,297 - +0.1 71,300 + -0.6 71,305 + -0.7 71,334 + +0.8 71,334 + +0.9 71,335 - -0.2 71,335 - +0.2 71,335 - +1.2 71,335 - +0.5 71,820 + ABID97_RS00320 0.33 +0.1 71,820 + ABID97_RS00320 0.33 -0.3 71,821 - ABID97_RS00320 0.33 -0.1 71,821 - ABID97_RS00320 0.33 +0.0 71,952 + ABID97_RS00320 0.43 +1.9 72,072 + ABID97_RS00320 0.52 -0.5 72,072 + ABID97_RS00320 0.52 -0.2 72,072 + ABID97_RS00320 0.52 +0.1 72,072 + ABID97_RS00320 0.52 -0.7 72,072 + ABID97_RS00320 0.52 -0.5 72,072 + ABID97_RS00320 0.52 -0.0 72,072 + ABID97_RS00320 0.52 -0.2 72,072 + ABID97_RS00320 0.52 +0.0 72,072 + ABID97_RS00320 0.52 -0.3 72,073 - ABID97_RS00320 0.52 +0.4 72,073 - ABID97_RS00320 0.52 +0.8 72,073 - ABID97_RS00320 0.52 +0.7 72,073 - ABID97_RS00320 0.52 -0.2 72,073 - ABID97_RS00320 0.52 +0.7 72,073 - ABID97_RS00320 0.52 -0.1 72,073 - ABID97_RS00320 0.52 -0.0 72,073 - ABID97_RS00320 0.52 -1.0 72,073 - ABID97_RS00320 0.52 -0.2 72,073 - ABID97_RS00320 0.52 +0.0 72,073 - ABID97_RS00320 0.52 +0.1 72,073 - ABID97_RS00320 0.52 -0.6 72,073 - ABID97_RS00320 0.52 -0.3 72,138 + ABID97_RS00320 0.57 +0.4 72,139 - ABID97_RS00320 0.58 -0.4 72,139 - ABID97_RS00320 0.58 +0.5 72,201 + ABID97_RS00320 0.62 -0.0
Or see this region's nucleotide sequence