Strain Fitness in Pseudomonas simiae WCS417 around PS417_17730

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17720 and PS417_17725 are separated by 28 nucleotidesPS417_17725 and PS417_17730 overlap by 35 nucleotidesPS417_17730 and PS417_17735 are separated by 63 nucleotides PS417_17720: PS417_17720 - xylitol 2-dehydrogenase (EC 1.1.1.9) (from data), at 3,867,597 to 3,868,676 _17720 PS417_17725: PS417_17725 - ribose ABC transporter permease, at 3,868,705 to 3,869,697 _17725 PS417_17730: PS417_17730 - ribonucleotide-diphosphate reductase subunit alpha, at 3,869,663 to 3,871,171 _17730 PS417_17735: PS417_17735 - LacI family transcriptional regulator, at 3,871,235 to 3,872,158 _17735 Position (kb) 3869 3870 3871 3872Strain fitness (log2 ratio) -2 -1 0 1at 3868.706 kb on + strandat 3868.707 kb on - strandat 3868.761 kb on + strandat 3868.775 kb on + strandat 3868.963 kb on + strand, within PS417_17725at 3869.003 kb on + strand, within PS417_17725at 3869.004 kb on - strand, within PS417_17725at 3869.075 kb on + strand, within PS417_17725at 3869.075 kb on + strand, within PS417_17725at 3869.114 kb on + strand, within PS417_17725at 3869.115 kb on - strand, within PS417_17725at 3869.126 kb on + strand, within PS417_17725at 3869.126 kb on + strand, within PS417_17725at 3869.127 kb on - strand, within PS417_17725at 3869.231 kb on + strand, within PS417_17725at 3869.300 kb on + strand, within PS417_17725at 3869.365 kb on + strand, within PS417_17725at 3869.673 kb on + strandat 3870.090 kb on + strandat 3870.091 kb on - strand, within PS417_17730at 3870.091 kb on - strand, within PS417_17730at 3871.732 kb on - strand, within PS417_17735at 3871.732 kb on - strand, within PS417_17735at 3872.029 kb on - strand, within PS417_17735

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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3,868,706 + -1.1
3,868,707 - -1.3
3,868,761 + +1.3
3,868,775 + -0.2
3,868,963 + PS417_17725 0.26 -0.4
3,869,003 + PS417_17725 0.30 -0.4
3,869,004 - PS417_17725 0.30 -0.4
3,869,075 + PS417_17725 0.37 -0.2
3,869,075 + PS417_17725 0.37 -2.2
3,869,114 + PS417_17725 0.41 -0.4
3,869,115 - PS417_17725 0.41 +0.2
3,869,126 + PS417_17725 0.42 -0.1
3,869,126 + PS417_17725 0.42 -0.1
3,869,127 - PS417_17725 0.42 +0.6
3,869,231 + PS417_17725 0.53 -0.1
3,869,300 + PS417_17725 0.60 +0.6
3,869,365 + PS417_17725 0.66 -0.5
3,869,673 + -0.3
3,870,090 + +0.6
3,870,091 - PS417_17730 0.28 -1.4
3,870,091 - PS417_17730 0.28 +0.4
3,871,732 - PS417_17735 0.54 -1.2
3,871,732 - PS417_17735 0.54 +0.5
3,872,029 - PS417_17735 0.86 -0.1

Or see this region's nucleotide sequence