Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13640 and PS417_13645 are separated by 30 nucleotides PS417_13645 and PS417_13650 are separated by 22 nucleotides PS417_13650 and PS417_13655 are separated by 7 nucleotides
PS417_13640: PS417_13640 - ribose ABC transporter permease, at 3,001,827 to 3,002,804
_13640
PS417_13645: PS417_13645 - ABC transporter, at 3,002,835 to 3,003,767
_13645
PS417_13650: PS417_13650 - LacI family transcriptional regulator, at 3,003,790 to 3,004,791
_13650
PS417_13655: PS417_13655 - xylulose kinase, at 3,004,799 to 3,006,289
_13655
Position (kb)
3003
3004
3005 Strain fitness (log2 ratio)
-2
-1
0
1 at 3003.034 kb on - strand, within PS417_13645 at 3003.065 kb on + strand, within PS417_13645 at 3003.249 kb on + strand, within PS417_13645 at 3003.598 kb on + strand, within PS417_13645 at 3003.738 kb on - strand at 3003.742 kb on - strand at 3003.742 kb on - strand at 3003.742 kb on - strand at 3003.742 kb on - strand at 3003.759 kb on - strand at 3003.923 kb on - strand, within PS417_13650 at 3003.923 kb on - strand, within PS417_13650 at 3003.969 kb on + strand, within PS417_13650 at 3004.007 kb on - strand, within PS417_13650 at 3004.761 kb on + strand at 3004.762 kb on - strand at 3004.918 kb on + strand at 3005.081 kb on + strand, within PS417_13655 at 3005.651 kb on + strand, within PS417_13655
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 3,003,034 - PS417_13645 0.21 +0.3 3,003,065 + PS417_13645 0.25 -0.6 3,003,249 + PS417_13645 0.44 +0.6 3,003,598 + PS417_13645 0.82 +0.3 3,003,738 - -0.3 3,003,742 - -1.0 3,003,742 - -1.0 3,003,742 - -0.2 3,003,742 - +0.3 3,003,759 - +0.6 3,003,923 - PS417_13650 0.13 +1.6 3,003,923 - PS417_13650 0.13 +0.4 3,003,969 + PS417_13650 0.18 +0.7 3,004,007 - PS417_13650 0.22 -0.1 3,004,761 + +1.1 3,004,762 - +0.9 3,004,918 + -2.0 3,005,081 + PS417_13655 0.19 +0.7 3,005,651 + PS417_13655 0.57 +1.1
Or see this region's nucleotide sequence