Strain Fitness in Pseudomonas simiae WCS417 around PS417_11510

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11505 and PS417_11510 are separated by 155 nucleotidesPS417_11510 and PS417_11515 are separated by 211 nucleotides PS417_11505: PS417_11505 - ion channel protein Tsx, at 2,474,162 to 2,475,109 _11505 PS417_11510: PS417_11510 - AraC family transcriptional regulator, at 2,475,265 to 2,476,203 _11510 PS417_11515: PS417_11515 - sugar ABC transporter substrate-binding protein, at 2,476,415 to 2,477,725 _11515 Position (kb) 2475 2476 2477Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2474.278 kb on - strand, within PS417_11505at 2474.412 kb on + strand, within PS417_11505at 2474.457 kb on + strand, within PS417_11505at 2474.457 kb on + strand, within PS417_11505at 2474.458 kb on - strand, within PS417_11505at 2474.634 kb on + strand, within PS417_11505at 2474.655 kb on + strand, within PS417_11505at 2474.714 kb on - strandat 2474.770 kb on + strand, within PS417_11505at 2474.808 kb on + strand, within PS417_11505at 2474.845 kb on - strand, within PS417_11505at 2474.859 kb on + strand, within PS417_11505at 2474.859 kb on + strandat 2474.890 kb on + strand, within PS417_11505at 2474.906 kb on + strand, within PS417_11505at 2474.943 kb on + strand, within PS417_11505at 2474.943 kb on + strand, within PS417_11505at 2474.943 kb on + strand, within PS417_11505at 2476.013 kb on + strand, within PS417_11510at 2476.216 kb on + strandat 2476.217 kb on - strandat 2476.217 kb on - strandat 2476.317 kb on - strandat 2476.414 kb on + strandat 2476.415 kb on - strandat 2476.800 kb on - strandat 2476.835 kb on + strand, within PS417_11515at 2476.889 kb on - strand, within PS417_11515at 2476.987 kb on + strand, within PS417_11515at 2477.094 kb on - strand, within PS417_11515at 2477.114 kb on + strand, within PS417_11515

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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2,474,278 - PS417_11505 0.12 +0.2
2,474,412 + PS417_11505 0.26 +0.8
2,474,457 + PS417_11505 0.31 -0.9
2,474,457 + PS417_11505 0.31 +0.3
2,474,458 - PS417_11505 0.31 -0.0
2,474,634 + PS417_11505 0.50 +0.3
2,474,655 + PS417_11505 0.52 -0.5
2,474,714 - +0.5
2,474,770 + PS417_11505 0.64 -0.2
2,474,808 + PS417_11505 0.68 -2.3
2,474,845 - PS417_11505 0.72 -0.8
2,474,859 + PS417_11505 0.74 +0.9
2,474,859 + +0.5
2,474,890 + PS417_11505 0.77 -1.2
2,474,906 + PS417_11505 0.78 -0.5
2,474,943 + PS417_11505 0.82 -0.3
2,474,943 + PS417_11505 0.82 +0.4
2,474,943 + PS417_11505 0.82 -0.2
2,476,013 + PS417_11510 0.80 -2.4
2,476,216 + -1.9
2,476,217 - -0.3
2,476,217 - -2.7
2,476,317 - -0.8
2,476,414 + -3.3
2,476,415 - -3.8
2,476,800 - -0.5
2,476,835 + PS417_11515 0.32 -4.8
2,476,889 - PS417_11515 0.36 -2.5
2,476,987 + PS417_11515 0.44 -2.0
2,477,094 - PS417_11515 0.52 -4.0
2,477,114 + PS417_11515 0.53 -2.8

Or see this region's nucleotide sequence