Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2164

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2163 and Echvi_2164 are separated by 29 nucleotidesEchvi_2164 and Echvi_2165 are separated by 67 nucleotides Echvi_2163: Echvi_2163 - TonB-linked outer membrane protein, SusC/RagA family, at 2,574,012 to 2,577,461 _2163 Echvi_2164: Echvi_2164 - SusD family., at 2,577,491 to 2,579,113 _2164 Echvi_2165: Echvi_2165 - Polysaccharide lyase family 8, C-terminal beta-sandwich domain./Polysaccharide lyase family 8, super-sandwich domain./Polysaccharide lyase family 8, N terminal alpha-helical domain., at 2,579,181 to 2,582,657 _2165 Position (kb) 2577 2578 2579 2580Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2576.502 kb on - strand, within Echvi_2163at 2576.524 kb on - strand, within Echvi_2163at 2576.527 kb on - strand, within Echvi_2163at 2576.527 kb on - strand, within Echvi_2163at 2576.527 kb on - strand, within Echvi_2163at 2576.541 kb on - strand, within Echvi_2163at 2576.547 kb on - strand, within Echvi_2163at 2576.547 kb on - strand, within Echvi_2163at 2576.547 kb on - strand, within Echvi_2163at 2576.553 kb on - strand, within Echvi_2163at 2576.553 kb on - strand, within Echvi_2163at 2576.553 kb on - strand, within Echvi_2163at 2576.677 kb on - strand, within Echvi_2163at 2576.678 kb on + strand, within Echvi_2163at 2576.743 kb on + strand, within Echvi_2163at 2576.744 kb on - strand, within Echvi_2163at 2576.757 kb on - strand, within Echvi_2163at 2576.762 kb on + strand, within Echvi_2163at 2576.763 kb on - strand, within Echvi_2163at 2576.839 kb on + strand, within Echvi_2163at 2576.889 kb on + strand, within Echvi_2163at 2576.889 kb on + strand, within Echvi_2163at 2576.890 kb on - strand, within Echvi_2163at 2576.985 kb on + strand, within Echvi_2163at 2576.985 kb on + strand, within Echvi_2163at 2577.068 kb on + strand, within Echvi_2163at 2577.084 kb on - strand, within Echvi_2163at 2577.138 kb on + strandat 2577.138 kb on + strandat 2577.197 kb on + strandat 2577.198 kb on - strandat 2577.198 kb on - strandat 2577.201 kb on + strandat 2577.201 kb on + strandat 2577.202 kb on - strandat 2577.237 kb on + strandat 2577.238 kb on - strandat 2577.239 kb on + strandat 2577.268 kb on - strandat 2577.282 kb on - strandat 2577.282 kb on - strandat 2577.282 kb on - strandat 2577.322 kb on - strandat 2577.399 kb on - strandat 2577.399 kb on - strandat 2577.497 kb on + strandat 2577.498 kb on - strandat 2577.498 kb on - strandat 2577.498 kb on - strandat 2577.498 kb on - strandat 2577.499 kb on + strandat 2577.499 kb on + strandat 2577.499 kb on + strandat 2577.500 kb on - strandat 2577.502 kb on + strandat 2577.525 kb on + strandat 2577.638 kb on + strandat 2577.644 kb on + strandat 2577.645 kb on - strandat 2577.646 kb on + strandat 2577.647 kb on - strandat 2577.647 kb on - strandat 2577.647 kb on - strandat 2577.650 kb on + strandat 2577.719 kb on - strand, within Echvi_2164at 2577.762 kb on - strand, within Echvi_2164at 2577.766 kb on + strand, within Echvi_2164at 2577.800 kb on - strand, within Echvi_2164at 2577.800 kb on - strand, within Echvi_2164at 2577.902 kb on - strand, within Echvi_2164at 2577.969 kb on + strand, within Echvi_2164at 2577.969 kb on + strand, within Echvi_2164at 2577.969 kb on + strand, within Echvi_2164at 2577.969 kb on + strand, within Echvi_2164at 2577.969 kb on + strand, within Echvi_2164at 2577.969 kb on + strand, within Echvi_2164at 2577.969 kb on + strand, within Echvi_2164at 2577.969 kb on + strand, within Echvi_2164at 2577.969 kb on + strand, within Echvi_2164at 2577.969 kb on + strand, within Echvi_2164at 2577.970 kb on - strand, within Echvi_2164at 2577.970 kb on - strand, within Echvi_2164at 2577.971 kb on + strand, within Echvi_2164at 2578.077 kb on - strandat 2578.093 kb on + strand, within Echvi_2164at 2578.094 kb on - strand, within Echvi_2164at 2578.152 kb on - strand, within Echvi_2164at 2578.214 kb on - strand, within Echvi_2164at 2578.239 kb on - strand, within Echvi_2164at 2578.239 kb on - strand, within Echvi_2164at 2578.239 kb on - strand, within Echvi_2164at 2578.239 kb on - strand, within Echvi_2164at 2578.248 kb on - strand, within Echvi_2164at 2578.313 kb on + strand, within Echvi_2164at 2578.342 kb on - strand, within Echvi_2164at 2578.449 kb on + strand, within Echvi_2164at 2578.451 kb on + strand, within Echvi_2164at 2578.452 kb on - strand, within Echvi_2164at 2578.452 kb on - strand, within Echvi_2164at 2578.469 kb on - strand, within Echvi_2164at 2578.479 kb on + strand, within Echvi_2164at 2578.535 kb on + strand, within Echvi_2164at 2578.535 kb on + strand, within Echvi_2164at 2578.535 kb on + strand, within Echvi_2164at 2578.536 kb on - strand, within Echvi_2164at 2578.536 kb on - strand, within Echvi_2164at 2578.536 kb on - strand, within Echvi_2164at 2578.536 kb on - strand, within Echvi_2164at 2578.558 kb on + strand, within Echvi_2164at 2578.559 kb on - strand, within Echvi_2164at 2578.559 kb on - strand, within Echvi_2164at 2578.600 kb on + strand, within Echvi_2164at 2578.613 kb on - strand, within Echvi_2164at 2578.613 kb on - strand, within Echvi_2164at 2578.644 kb on - strand, within Echvi_2164at 2578.646 kb on - strand, within Echvi_2164at 2578.646 kb on - strand, within Echvi_2164at 2578.652 kb on + strand, within Echvi_2164at 2578.703 kb on + strand, within Echvi_2164at 2578.703 kb on + strand, within Echvi_2164at 2578.704 kb on - strand, within Echvi_2164at 2578.704 kb on - strand, within Echvi_2164at 2578.704 kb on - strand, within Echvi_2164at 2578.704 kb on - strand, within Echvi_2164at 2578.724 kb on - strand, within Echvi_2164at 2578.747 kb on + strand, within Echvi_2164at 2578.747 kb on + strand, within Echvi_2164at 2578.750 kb on - strand, within Echvi_2164at 2578.786 kb on + strand, within Echvi_2164at 2578.787 kb on - strand, within Echvi_2164at 2578.789 kb on + strand, within Echvi_2164at 2578.789 kb on + strand, within Echvi_2164at 2578.789 kb on + strand, within Echvi_2164at 2578.790 kb on - strand, within Echvi_2164at 2578.790 kb on - strand, within Echvi_2164at 2578.819 kb on + strand, within Echvi_2164at 2578.819 kb on + strand, within Echvi_2164at 2578.824 kb on + strand, within Echvi_2164at 2578.825 kb on - strand, within Echvi_2164at 2578.833 kb on + strand, within Echvi_2164at 2578.834 kb on - strand, within Echvi_2164at 2578.889 kb on - strand, within Echvi_2164at 2578.940 kb on + strand, within Echvi_2164at 2578.940 kb on + strand, within Echvi_2164at 2578.946 kb on + strand, within Echvi_2164at 2578.955 kb on + strandat 2578.955 kb on + strandat 2578.955 kb on + strandat 2578.955 kb on + strandat 2578.960 kb on + strandat 2578.993 kb on + strandat 2578.994 kb on - strandat 2579.045 kb on + strandat 2579.046 kb on - strandat 2579.092 kb on - strandat 2579.115 kb on - strandat 2579.123 kb on + strandat 2579.167 kb on + strandat 2579.209 kb on + strandat 2579.209 kb on + strandat 2579.210 kb on - strandat 2579.210 kb on - strandat 2579.227 kb on + strandat 2579.228 kb on - strandat 2579.228 kb on - strandat 2579.228 kb on - strandat 2579.264 kb on + strandat 2579.278 kb on + strandat 2579.329 kb on + strandat 2579.330 kb on - strandat 2579.382 kb on + strandat 2579.383 kb on - strandat 2579.440 kb on + strandat 2579.475 kb on + strandat 2579.476 kb on - strandat 2579.638 kb on + strand, within Echvi_2165at 2579.660 kb on + strand, within Echvi_2165at 2579.661 kb on - strand, within Echvi_2165at 2579.745 kb on + strand, within Echvi_2165at 2579.745 kb on + strand, within Echvi_2165at 2579.745 kb on + strand, within Echvi_2165at 2579.745 kb on + strand, within Echvi_2165at 2579.746 kb on - strand, within Echvi_2165at 2579.746 kb on - strand, within Echvi_2165at 2579.746 kb on - strand, within Echvi_2165at 2579.746 kb on - strand, within Echvi_2165at 2579.859 kb on + strand, within Echvi_2165at 2579.859 kb on + strand, within Echvi_2165at 2579.859 kb on + strand, within Echvi_2165at 2579.860 kb on - strand, within Echvi_2165at 2579.860 kb on - strand, within Echvi_2165at 2579.884 kb on - strand, within Echvi_2165at 2579.889 kb on + strand, within Echvi_2165at 2579.889 kb on + strand, within Echvi_2165at 2579.890 kb on - strand, within Echvi_2165at 2579.890 kb on - strand, within Echvi_2165at 2579.890 kb on - strand, within Echvi_2165at 2579.890 kb on - strand, within Echvi_2165at 2579.890 kb on - strand, within Echvi_2165at 2579.907 kb on + strand, within Echvi_2165at 2579.908 kb on - strand, within Echvi_2165at 2579.908 kb on - strand, within Echvi_2165at 2579.955 kb on + strand, within Echvi_2165at 2579.955 kb on + strand, within Echvi_2165at 2579.961 kb on + strand, within Echvi_2165at 2579.962 kb on - strand, within Echvi_2165

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,576,502 - Echvi_2163 0.72 +2.2
2,576,524 - Echvi_2163 0.73 -0.3
2,576,527 - Echvi_2163 0.73 -1.7
2,576,527 - Echvi_2163 0.73 -0.5
2,576,527 - Echvi_2163 0.73 -1.0
2,576,541 - Echvi_2163 0.73 +0.5
2,576,547 - Echvi_2163 0.73 +1.0
2,576,547 - Echvi_2163 0.73 -0.3
2,576,547 - Echvi_2163 0.73 -1.7
2,576,553 - Echvi_2163 0.74 +0.6
2,576,553 - Echvi_2163 0.74 -2.3
2,576,553 - Echvi_2163 0.74 -0.2
2,576,677 - Echvi_2163 0.77 -0.6
2,576,678 + Echvi_2163 0.77 +0.6
2,576,743 + Echvi_2163 0.79 -1.6
2,576,744 - Echvi_2163 0.79 -0.4
2,576,757 - Echvi_2163 0.80 +1.1
2,576,762 + Echvi_2163 0.80 -0.4
2,576,763 - Echvi_2163 0.80 -0.3
2,576,839 + Echvi_2163 0.82 +0.3
2,576,889 + Echvi_2163 0.83 +0.8
2,576,889 + Echvi_2163 0.83 -0.8
2,576,890 - Echvi_2163 0.83 -0.4
2,576,985 + Echvi_2163 0.86 +1.1
2,576,985 + Echvi_2163 0.86 -0.1
2,577,068 + Echvi_2163 0.89 +0.0
2,577,084 - Echvi_2163 0.89 +0.7
2,577,138 + +0.3
2,577,138 + -1.1
2,577,197 + +0.2
2,577,198 - -0.6
2,577,198 - +0.5
2,577,201 + +1.2
2,577,201 + -0.6
2,577,202 - +0.2
2,577,237 + +2.1
2,577,238 - +0.1
2,577,239 + -0.4
2,577,268 - +0.0
2,577,282 - -0.4
2,577,282 - -1.0
2,577,282 - -0.1
2,577,322 - +0.2
2,577,399 - +1.0
2,577,399 - +0.5
2,577,497 + -0.3
2,577,498 - +0.0
2,577,498 - -0.3
2,577,498 - +0.4
2,577,498 - +0.6
2,577,499 + +0.4
2,577,499 + -1.1
2,577,499 + -0.3
2,577,500 - -0.5
2,577,502 + -0.2
2,577,525 + +0.3
2,577,638 + +0.5
2,577,644 + -0.1
2,577,645 - +0.1
2,577,646 + -1.4
2,577,647 - -0.7
2,577,647 - +1.1
2,577,647 - +0.2
2,577,650 + -0.5
2,577,719 - Echvi_2164 0.14 -0.1
2,577,762 - Echvi_2164 0.17 -2.0
2,577,766 + Echvi_2164 0.17 +0.6
2,577,800 - Echvi_2164 0.19 +0.1
2,577,800 - Echvi_2164 0.19 -0.9
2,577,902 - Echvi_2164 0.25 -0.2
2,577,969 + Echvi_2164 0.29 +0.1
2,577,969 + Echvi_2164 0.29 +0.6
2,577,969 + Echvi_2164 0.29 -0.6
2,577,969 + Echvi_2164 0.29 -0.5
2,577,969 + Echvi_2164 0.29 -0.1
2,577,969 + Echvi_2164 0.29 +0.4
2,577,969 + Echvi_2164 0.29 +1.6
2,577,969 + Echvi_2164 0.29 +1.0
2,577,969 + Echvi_2164 0.29 -0.0
2,577,969 + Echvi_2164 0.29 -1.4
2,577,970 - Echvi_2164 0.30 +0.2
2,577,970 - Echvi_2164 0.30 -1.3
2,577,971 + Echvi_2164 0.30 -0.1
2,578,077 - +1.3
2,578,093 + Echvi_2164 0.37 +0.4
2,578,094 - Echvi_2164 0.37 -1.2
2,578,152 - Echvi_2164 0.41 -2.4
2,578,214 - Echvi_2164 0.45 +0.2
2,578,239 - Echvi_2164 0.46 -0.3
2,578,239 - Echvi_2164 0.46 -0.8
2,578,239 - Echvi_2164 0.46 +0.9
2,578,239 - Echvi_2164 0.46 +0.0
2,578,248 - Echvi_2164 0.47 +0.8
2,578,313 + Echvi_2164 0.51 -0.1
2,578,342 - Echvi_2164 0.52 -2.3
2,578,449 + Echvi_2164 0.59 -1.9
2,578,451 + Echvi_2164 0.59 -0.2
2,578,452 - Echvi_2164 0.59 +1.0
2,578,452 - Echvi_2164 0.59 +0.8
2,578,469 - Echvi_2164 0.60 +2.0
2,578,479 + Echvi_2164 0.61 +0.0
2,578,535 + Echvi_2164 0.64 -1.1
2,578,535 + Echvi_2164 0.64 +0.5
2,578,535 + Echvi_2164 0.64 -0.1
2,578,536 - Echvi_2164 0.64 +0.1
2,578,536 - Echvi_2164 0.64 +0.2
2,578,536 - Echvi_2164 0.64 +1.2
2,578,536 - Echvi_2164 0.64 +0.3
2,578,558 + Echvi_2164 0.66 +0.8
2,578,559 - Echvi_2164 0.66 +0.7
2,578,559 - Echvi_2164 0.66 -1.9
2,578,600 + Echvi_2164 0.68 +0.5
2,578,613 - Echvi_2164 0.69 +2.0
2,578,613 - Echvi_2164 0.69 -0.2
2,578,644 - Echvi_2164 0.71 +1.2
2,578,646 - Echvi_2164 0.71 -1.2
2,578,646 - Echvi_2164 0.71 -0.5
2,578,652 + Echvi_2164 0.72 -1.1
2,578,703 + Echvi_2164 0.75 -0.1
2,578,703 + Echvi_2164 0.75 -0.2
2,578,704 - Echvi_2164 0.75 +0.2
2,578,704 - Echvi_2164 0.75 -2.1
2,578,704 - Echvi_2164 0.75 -0.7
2,578,704 - Echvi_2164 0.75 +0.2
2,578,724 - Echvi_2164 0.76 -1.7
2,578,747 + Echvi_2164 0.77 -0.2
2,578,747 + Echvi_2164 0.77 +0.5
2,578,750 - Echvi_2164 0.78 +0.1
2,578,786 + Echvi_2164 0.80 +0.9
2,578,787 - Echvi_2164 0.80 +0.5
2,578,789 + Echvi_2164 0.80 +1.1
2,578,789 + Echvi_2164 0.80 +1.2
2,578,789 + Echvi_2164 0.80 +0.4
2,578,790 - Echvi_2164 0.80 -0.2
2,578,790 - Echvi_2164 0.80 +0.2
2,578,819 + Echvi_2164 0.82 -0.2
2,578,819 + Echvi_2164 0.82 -0.7
2,578,824 + Echvi_2164 0.82 -1.2
2,578,825 - Echvi_2164 0.82 +1.6
2,578,833 + Echvi_2164 0.83 +0.7
2,578,834 - Echvi_2164 0.83 +1.0
2,578,889 - Echvi_2164 0.86 -1.4
2,578,940 + Echvi_2164 0.89 -1.0
2,578,940 + Echvi_2164 0.89 +1.0
2,578,946 + Echvi_2164 0.90 +0.3
2,578,955 + -0.8
2,578,955 + +0.9
2,578,955 + -2.1
2,578,955 + -0.9
2,578,960 + +1.6
2,578,993 + -0.5
2,578,994 - -0.2
2,579,045 + +1.6
2,579,046 - -0.4
2,579,092 - +1.6
2,579,115 - +0.1
2,579,123 + -0.4
2,579,167 + +0.9
2,579,209 + -0.1
2,579,209 + -0.4
2,579,210 - -1.0
2,579,210 - +0.7
2,579,227 + +0.1
2,579,228 - -1.3
2,579,228 - -1.9
2,579,228 - -1.9
2,579,264 + -2.0
2,579,278 + -0.7
2,579,329 + -0.8
2,579,330 - -0.2
2,579,382 + -0.2
2,579,383 - -1.6
2,579,440 + -1.2
2,579,475 + +0.4
2,579,476 - +0.6
2,579,638 + Echvi_2165 0.13 +0.8
2,579,660 + Echvi_2165 0.14 -1.0
2,579,661 - Echvi_2165 0.14 -2.1
2,579,745 + Echvi_2165 0.16 +0.8
2,579,745 + Echvi_2165 0.16 +0.5
2,579,745 + Echvi_2165 0.16 -1.0
2,579,745 + Echvi_2165 0.16 +1.2
2,579,746 - Echvi_2165 0.16 +1.0
2,579,746 - Echvi_2165 0.16 -0.2
2,579,746 - Echvi_2165 0.16 -0.6
2,579,746 - Echvi_2165 0.16 -1.0
2,579,859 + Echvi_2165 0.19 +0.3
2,579,859 + Echvi_2165 0.19 -0.3
2,579,859 + Echvi_2165 0.19 -1.8
2,579,860 - Echvi_2165 0.20 -1.6
2,579,860 - Echvi_2165 0.20 +0.0
2,579,884 - Echvi_2165 0.20 +3.2
2,579,889 + Echvi_2165 0.20 -0.9
2,579,889 + Echvi_2165 0.20 -1.3
2,579,890 - Echvi_2165 0.20 -2.2
2,579,890 - Echvi_2165 0.20 -0.2
2,579,890 - Echvi_2165 0.20 +1.6
2,579,890 - Echvi_2165 0.20 -3.2
2,579,890 - Echvi_2165 0.20 -0.1
2,579,907 + Echvi_2165 0.21 -0.7
2,579,908 - Echvi_2165 0.21 -1.7
2,579,908 - Echvi_2165 0.21 +0.9
2,579,955 + Echvi_2165 0.22 +0.4
2,579,955 + Echvi_2165 0.22 +0.2
2,579,961 + Echvi_2165 0.22 -0.8
2,579,962 - Echvi_2165 0.22 +1.6

Or see this region's nucleotide sequence