Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0039 and Echvi_0040 are separated by 80 nucleotides Echvi_0040 and Echvi_0041 overlap by 56 nucleotides Echvi_0041 and Echvi_0042 are separated by 123 nucleotides
Echvi_0039: Echvi_0039 - Predicted membrane protein (DUF2154)., at 37,031 to 37,831
_0039
Echvi_0040: Echvi_0040 - hypothetical protein, at 37,912 to 38,079
_0040
Echvi_0041: Echvi_0041 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 38,024 to 38,701
_0041
Echvi_0042: Echvi_0042 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 38,825 to 39,874
_0042
Position (kb) 38
39 Strain fitness (log2 ratio) -2
-1
0
1
2 at 37.116 kb on + strand, within Echvi_0039 at 37.117 kb on - strand, within Echvi_0039 at 37.117 kb on - strand, within Echvi_0039 at 37.117 kb on - strand, within Echvi_0039 at 37.147 kb on + strand, within Echvi_0039 at 37.148 kb on - strand, within Echvi_0039 at 37.257 kb on - strand, within Echvi_0039 at 37.381 kb on + strand, within Echvi_0039 at 37.566 kb on + strand, within Echvi_0039 at 37.588 kb on + strand, within Echvi_0039 at 37.589 kb on - strand, within Echvi_0039 at 37.589 kb on - strand, within Echvi_0039 at 37.678 kb on + strand, within Echvi_0039 at 37.715 kb on + strand, within Echvi_0039 at 37.775 kb on + strand at 37.776 kb on - strand at 37.776 kb on - strand at 37.778 kb on + strand at 37.779 kb on - strand at 37.779 kb on - strand at 37.840 kb on + strand at 37.892 kb on + strand at 37.895 kb on - strand at 38.702 kb on - strand at 38.741 kb on + strand at 38.764 kb on + strand at 38.765 kb on - strand at 38.784 kb on + strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.786 kb on + strand at 38.786 kb on + strand at 38.786 kb on + strand at 38.787 kb on - strand at 38.787 kb on - strand at 38.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 37,116 + Echvi_0039 0.11 -0.7 37,117 - Echvi_0039 0.11 -0.7 37,117 - Echvi_0039 0.11 +0.3 37,117 - Echvi_0039 0.11 -0.1 37,147 + Echvi_0039 0.14 -2.2 37,148 - Echvi_0039 0.15 +0.5 37,257 - Echvi_0039 0.28 -0.0 37,381 + Echvi_0039 0.44 -0.7 37,566 + Echvi_0039 0.67 +0.9 37,588 + Echvi_0039 0.70 +1.2 37,589 - Echvi_0039 0.70 -0.1 37,589 - Echvi_0039 0.70 +0.1 37,678 + Echvi_0039 0.81 +0.5 37,715 + Echvi_0039 0.85 -1.1 37,775 + -0.5 37,776 - -0.9 37,776 - -0.7 37,778 + +0.3 37,779 - +0.2 37,779 - +0.3 37,840 + -0.8 37,892 + -1.1 37,895 - -1.1 38,702 - +1.0 38,741 + -0.4 38,764 + +0.5 38,765 - -0.5 38,784 + -1.7 38,785 - +1.0 38,785 - +0.3 38,785 - -0.2 38,785 - -1.2 38,785 - -0.5 38,786 + +0.4 38,786 + +0.5 38,786 + +0.3 38,787 - +0.6 38,787 - +2.7 38,789 - +0.1
Or see this region's nucleotide sequence