Experiment: m.b. Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21605 and CA264_21610 are separated by 16 nucleotides CA264_21610 and CA264_21615 are separated by 98 nucleotides CA264_21615 and CA264_21620 are separated by 3 nucleotides
CA264_21605: CA264_21605 - hypothetical protein, at 189,241 to 190,242
_21605
CA264_21610: CA264_21610 - hypothetical protein, at 190,259 to 190,885
_21610
CA264_21615: CA264_21615 - hypothetical protein, at 190,984 to 191,340
_21615
CA264_21620: CA264_21620 - hypothetical protein, at 191,344 to 192,588
_21620
Position (kb) 190
191
192 Strain fitness (log2 ratio) -2
-1
0
1
2 at 190.007 kb on + strand, within CA264_21605 at 190.011 kb on + strand, within CA264_21605 at 190.011 kb on + strand, within CA264_21605 at 190.011 kb on + strand, within CA264_21605 at 190.012 kb on - strand, within CA264_21605 at 190.012 kb on - strand, within CA264_21605 at 190.012 kb on - strand, within CA264_21605 at 190.012 kb on - strand, within CA264_21605 at 190.012 kb on - strand, within CA264_21605 at 190.040 kb on + strand, within CA264_21605 at 190.144 kb on - strand at 190.166 kb on + strand at 190.166 kb on + strand at 190.189 kb on - strand at 190.229 kb on + strand at 190.229 kb on + strand at 190.231 kb on + strand at 190.231 kb on + strand at 190.232 kb on - strand at 190.232 kb on - strand at 190.232 kb on - strand at 190.241 kb on - strand at 190.388 kb on + strand, within CA264_21610 at 190.388 kb on + strand, within CA264_21610 at 190.388 kb on + strand, within CA264_21610 at 190.388 kb on + strand, within CA264_21610 at 190.388 kb on + strand, within CA264_21610 at 190.446 kb on - strand, within CA264_21610 at 190.446 kb on - strand, within CA264_21610 at 190.500 kb on + strand, within CA264_21610 at 190.586 kb on + strand, within CA264_21610 at 190.621 kb on + strand, within CA264_21610 at 190.622 kb on - strand, within CA264_21610 at 190.762 kb on + strand, within CA264_21610 at 190.880 kb on + strand at 190.881 kb on - strand at 190.881 kb on - strand at 190.881 kb on - strand at 190.895 kb on + strand at 190.921 kb on + strand at 190.941 kb on - strand at 190.942 kb on + strand at 190.945 kb on + strand at 190.952 kb on + strand at 190.953 kb on - strand at 190.953 kb on - strand at 190.953 kb on - strand at 190.970 kb on - strand at 190.970 kb on - strand at 190.993 kb on - strand at 191.236 kb on + strand, within CA264_21615 at 191.237 kb on - strand, within CA264_21615 at 191.237 kb on - strand, within CA264_21615 at 191.237 kb on - strand, within CA264_21615 at 191.259 kb on + strand, within CA264_21615 at 191.259 kb on + strand, within CA264_21615 at 191.260 kb on - strand, within CA264_21615 at 191.381 kb on - strand at 191.384 kb on + strand at 191.450 kb on - strand at 191.575 kb on + strand, within CA264_21620 at 191.662 kb on - strand, within CA264_21620 at 191.662 kb on - strand, within CA264_21620 at 191.683 kb on + strand, within CA264_21620 at 191.795 kb on - strand, within CA264_21620 at 191.813 kb on + strand, within CA264_21620 at 191.814 kb on - strand, within CA264_21620 at 191.814 kb on - strand, within CA264_21620 at 191.870 kb on + strand, within CA264_21620 at 191.870 kb on + strand, within CA264_21620 at 191.874 kb on + strand, within CA264_21620 at 191.940 kb on + strand, within CA264_21620 at 191.942 kb on + strand, within CA264_21620 at 191.943 kb on - strand, within CA264_21620 at 192.152 kb on - strand, within CA264_21620 at 192.188 kb on + strand, within CA264_21620 at 192.188 kb on + strand, within CA264_21620 at 192.188 kb on + strand, within CA264_21620 at 192.189 kb on - strand, within CA264_21620 at 192.230 kb on - strand, within CA264_21620 at 192.284 kb on + strand, within CA264_21620 at 192.315 kb on + strand, within CA264_21620 at 192.318 kb on + strand, within CA264_21620
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml remove 190,007 + CA264_21605 0.76 +0.6 190,011 + CA264_21605 0.77 +0.9 190,011 + CA264_21605 0.77 +0.5 190,011 + CA264_21605 0.77 +0.9 190,012 - CA264_21605 0.77 +0.1 190,012 - CA264_21605 0.77 +0.8 190,012 - CA264_21605 0.77 -0.0 190,012 - CA264_21605 0.77 +1.2 190,012 - CA264_21605 0.77 +2.6 190,040 + CA264_21605 0.80 -0.7 190,144 - +0.0 190,166 + +0.4 190,166 + -1.6 190,189 - +0.5 190,229 + +0.8 190,229 + -1.1 190,231 + +0.8 190,231 + -0.3 190,232 - -1.7 190,232 - +0.2 190,232 - +0.6 190,241 - +0.2 190,388 + CA264_21610 0.21 -0.1 190,388 + CA264_21610 0.21 -1.4 190,388 + CA264_21610 0.21 -1.4 190,388 + CA264_21610 0.21 -0.7 190,388 + CA264_21610 0.21 -0.4 190,446 - CA264_21610 0.30 +0.6 190,446 - CA264_21610 0.30 -0.1 190,500 + CA264_21610 0.38 -0.3 190,586 + CA264_21610 0.52 +0.3 190,621 + CA264_21610 0.58 -0.4 190,622 - CA264_21610 0.58 -0.3 190,762 + CA264_21610 0.80 +0.2 190,880 + +0.4 190,881 - -2.5 190,881 - -1.6 190,881 - -1.0 190,895 + +0.0 190,921 + +0.1 190,941 - +1.6 190,942 + +0.4 190,945 + -1.0 190,952 + -1.3 190,953 - -0.2 190,953 - -0.4 190,953 - +0.2 190,970 - +0.0 190,970 - +0.3 190,993 - +0.5 191,236 + CA264_21615 0.71 -1.0 191,237 - CA264_21615 0.71 +0.6 191,237 - CA264_21615 0.71 -2.3 191,237 - CA264_21615 0.71 +0.2 191,259 + CA264_21615 0.77 -2.5 191,259 + CA264_21615 0.77 -0.9 191,260 - CA264_21615 0.77 -1.3 191,381 - -1.6 191,384 + -1.5 191,450 - -0.1 191,575 + CA264_21620 0.19 -0.2 191,662 - CA264_21620 0.26 +0.6 191,662 - CA264_21620 0.26 -0.1 191,683 + CA264_21620 0.27 +0.8 191,795 - CA264_21620 0.36 +1.6 191,813 + CA264_21620 0.38 +0.4 191,814 - CA264_21620 0.38 +2.2 191,814 - CA264_21620 0.38 +0.1 191,870 + CA264_21620 0.42 -0.5 191,870 + CA264_21620 0.42 +0.2 191,874 + CA264_21620 0.43 +0.3 191,940 + CA264_21620 0.48 +0.0 191,942 + CA264_21620 0.48 +0.3 191,943 - CA264_21620 0.48 -1.7 192,152 - CA264_21620 0.65 +0.6 192,188 + CA264_21620 0.68 +0.2 192,188 + CA264_21620 0.68 -0.5 192,188 + CA264_21620 0.68 +0.2 192,189 - CA264_21620 0.68 +0.2 192,230 - CA264_21620 0.71 -1.0 192,284 + CA264_21620 0.76 +0.8 192,315 + CA264_21620 0.78 +0.3 192,318 + CA264_21620 0.78 +1.7
Or see this region's nucleotide sequence