Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21030

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21020 and CA264_21025 are separated by 1 nucleotidesCA264_21025 and CA264_21030 are separated by 35 nucleotidesCA264_21030 and CA264_21035 are separated by 104 nucleotides CA264_21020: CA264_21020 - conjugative transposon protein TraM, at 65,177 to 66,355 _21020 CA264_21025: CA264_21025 - conjugative transposon protein TraN, at 66,357 to 67,145 _21025 CA264_21030: CA264_21030 - hypothetical protein, at 67,181 to 67,600 _21030 CA264_21035: CA264_21035 - mobilization protein, at 67,705 to 69,672 _21035 Position (kb) 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 66.234 kb on - strand, within CA264_21020at 66.234 kb on - strand, within CA264_21020at 66.234 kb on - strand, within CA264_21020at 66.304 kb on + strandat 66.329 kb on + strandat 66.329 kb on + strandat 66.330 kb on - strandat 66.340 kb on + strandat 66.343 kb on + strandat 66.354 kb on - strandat 66.367 kb on + strandat 66.376 kb on + strandat 66.376 kb on + strandat 66.376 kb on + strandat 66.377 kb on - strandat 66.378 kb on + strandat 66.379 kb on - strandat 66.431 kb on - strandat 66.431 kb on - strandat 66.431 kb on - strandat 66.431 kb on - strandat 66.481 kb on + strand, within CA264_21025at 66.486 kb on + strand, within CA264_21025at 66.486 kb on + strand, within CA264_21025at 66.487 kb on - strand, within CA264_21025at 66.487 kb on - strand, within CA264_21025at 66.490 kb on + strand, within CA264_21025at 66.490 kb on + strand, within CA264_21025at 66.490 kb on + strand, within CA264_21025at 66.490 kb on + strand, within CA264_21025at 66.490 kb on + strand, within CA264_21025at 66.491 kb on - strand, within CA264_21025at 66.491 kb on - strand, within CA264_21025at 66.491 kb on - strand, within CA264_21025at 66.491 kb on - strand, within CA264_21025at 66.491 kb on - strand, within CA264_21025at 66.494 kb on + strand, within CA264_21025at 66.495 kb on - strand, within CA264_21025at 66.523 kb on + strand, within CA264_21025at 66.524 kb on - strand, within CA264_21025at 66.524 kb on - strand, within CA264_21025at 66.579 kb on - strand, within CA264_21025at 66.582 kb on - strand, within CA264_21025at 66.582 kb on - strand, within CA264_21025at 66.615 kb on + strand, within CA264_21025at 66.617 kb on + strand, within CA264_21025at 66.617 kb on + strand, within CA264_21025at 66.617 kb on + strand, within CA264_21025at 66.617 kb on + strand, within CA264_21025at 66.618 kb on - strand, within CA264_21025at 66.618 kb on - strand, within CA264_21025at 66.618 kb on - strand, within CA264_21025at 66.618 kb on - strand, within CA264_21025at 66.627 kb on + strand, within CA264_21025at 66.663 kb on - strand, within CA264_21025at 66.664 kb on + strand, within CA264_21025at 66.665 kb on - strand, within CA264_21025at 66.771 kb on - strand, within CA264_21025at 66.771 kb on - strand, within CA264_21025at 66.819 kb on + strand, within CA264_21025at 66.819 kb on + strand, within CA264_21025at 66.819 kb on + strand, within CA264_21025at 66.819 kb on + strand, within CA264_21025at 66.820 kb on - strand, within CA264_21025at 66.820 kb on - strand, within CA264_21025at 66.822 kb on - strand, within CA264_21025at 66.851 kb on - strand, within CA264_21025at 66.857 kb on + strand, within CA264_21025at 66.881 kb on + strand, within CA264_21025at 67.114 kb on - strandat 67.141 kb on + strandat 67.142 kb on - strandat 67.176 kb on + strandat 67.181 kb on - strandat 67.209 kb on - strandat 67.293 kb on - strand, within CA264_21030at 67.322 kb on + strand, within CA264_21030at 67.325 kb on - strand, within CA264_21030at 67.371 kb on - strand, within CA264_21030at 67.455 kb on + strand, within CA264_21030at 67.456 kb on - strand, within CA264_21030at 67.456 kb on - strand, within CA264_21030at 67.539 kb on + strand, within CA264_21030at 67.540 kb on - strand, within CA264_21030at 67.540 kb on - strand, within CA264_21030at 67.668 kb on + strandat 67.668 kb on + strandat 67.668 kb on + strandat 67.676 kb on - strandat 67.695 kb on - strandat 67.704 kb on + strandat 67.755 kb on + strandat 67.756 kb on - strandat 67.768 kb on - strandat 67.781 kb on + strandat 67.782 kb on - strandat 67.782 kb on - strandat 67.782 kb on - strandat 67.782 kb on - strandat 67.782 kb on - strandat 67.798 kb on - strandat 67.812 kb on + strandat 67.812 kb on + strandat 67.813 kb on - strandat 67.816 kb on + strandat 67.816 kb on + strandat 67.817 kb on - strandat 67.845 kb on - strandat 67.845 kb on - strandat 67.861 kb on + strandat 67.861 kb on + strandat 67.874 kb on - strandat 67.874 kb on - strandat 67.874 kb on - strandat 67.874 kb on - strandat 67.965 kb on + strand, within CA264_21035at 68.077 kb on + strand, within CA264_21035at 68.077 kb on + strand, within CA264_21035at 68.077 kb on + strand, within CA264_21035at 68.117 kb on + strand, within CA264_21035at 68.118 kb on - strand, within CA264_21035at 68.118 kb on - strand, within CA264_21035at 68.142 kb on + strand, within CA264_21035at 68.143 kb on - strand, within CA264_21035at 68.144 kb on + strand, within CA264_21035at 68.145 kb on - strand, within CA264_21035at 68.248 kb on + strand, within CA264_21035at 68.248 kb on + strand, within CA264_21035at 68.248 kb on + strand, within CA264_21035at 68.248 kb on + strand, within CA264_21035at 68.248 kb on + strand, within CA264_21035at 68.249 kb on - strand, within CA264_21035at 68.251 kb on + strand, within CA264_21035at 68.251 kb on + strand, within CA264_21035at 68.394 kb on + strand, within CA264_21035at 68.394 kb on + strand, within CA264_21035at 68.394 kb on + strand, within CA264_21035at 68.413 kb on - strand, within CA264_21035at 68.413 kb on - strand, within CA264_21035at 68.440 kb on + strand, within CA264_21035at 68.443 kb on + strand, within CA264_21035at 68.449 kb on + strand, within CA264_21035at 68.461 kb on - strand, within CA264_21035at 68.554 kb on + strand, within CA264_21035

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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66,234 - CA264_21020 0.90 -0.4
66,234 - CA264_21020 0.90 +0.2
66,234 - CA264_21020 0.90 +0.7
66,304 + +0.1
66,329 + +0.0
66,329 + -0.1
66,330 - -0.6
66,340 + -0.7
66,343 + -0.1
66,354 - -1.7
66,367 + +1.2
66,376 + +0.4
66,376 + -0.7
66,376 + +0.1
66,377 - +0.2
66,378 + -0.3
66,379 - -0.1
66,431 - +0.4
66,431 - -0.6
66,431 - +0.8
66,431 - -0.2
66,481 + CA264_21025 0.16 -0.3
66,486 + CA264_21025 0.16 +0.5
66,486 + CA264_21025 0.16 -0.5
66,487 - CA264_21025 0.16 -0.1
66,487 - CA264_21025 0.16 -2.2
66,490 + CA264_21025 0.17 +0.9
66,490 + CA264_21025 0.17 +0.3
66,490 + CA264_21025 0.17 +0.1
66,490 + CA264_21025 0.17 -1.0
66,490 + CA264_21025 0.17 +0.5
66,491 - CA264_21025 0.17 -0.1
66,491 - CA264_21025 0.17 +0.7
66,491 - CA264_21025 0.17 +0.0
66,491 - CA264_21025 0.17 +0.3
66,491 - CA264_21025 0.17 -0.2
66,494 + CA264_21025 0.17 +0.7
66,495 - CA264_21025 0.17 +1.0
66,523 + CA264_21025 0.21 -0.2
66,524 - CA264_21025 0.21 +0.6
66,524 - CA264_21025 0.21 +0.5
66,579 - CA264_21025 0.28 -0.1
66,582 - CA264_21025 0.29 -0.8
66,582 - CA264_21025 0.29 -0.2
66,615 + CA264_21025 0.33 -0.2
66,617 + CA264_21025 0.33 +0.9
66,617 + CA264_21025 0.33 -0.2
66,617 + CA264_21025 0.33 -0.6
66,617 + CA264_21025 0.33 +0.1
66,618 - CA264_21025 0.33 -0.4
66,618 - CA264_21025 0.33 -1.5
66,618 - CA264_21025 0.33 -0.2
66,618 - CA264_21025 0.33 -0.6
66,627 + CA264_21025 0.34 -0.1
66,663 - CA264_21025 0.39 -0.0
66,664 + CA264_21025 0.39 -1.5
66,665 - CA264_21025 0.39 +0.5
66,771 - CA264_21025 0.52 -1.8
66,771 - CA264_21025 0.52 -0.0
66,819 + CA264_21025 0.59 -0.1
66,819 + CA264_21025 0.59 -1.4
66,819 + CA264_21025 0.59 +0.1
66,819 + CA264_21025 0.59 +0.4
66,820 - CA264_21025 0.59 -0.7
66,820 - CA264_21025 0.59 -1.2
66,822 - CA264_21025 0.59 +0.4
66,851 - CA264_21025 0.63 -0.7
66,857 + CA264_21025 0.63 +1.9
66,881 + CA264_21025 0.66 -0.3
67,114 - +2.0
67,141 + -1.0
67,142 - -1.4
67,176 + +0.3
67,181 - -0.1
67,209 - +1.3
67,293 - CA264_21030 0.27 +0.6
67,322 + CA264_21030 0.34 +0.5
67,325 - CA264_21030 0.34 +0.0
67,371 - CA264_21030 0.45 +0.0
67,455 + CA264_21030 0.65 -1.3
67,456 - CA264_21030 0.65 +1.6
67,456 - CA264_21030 0.65 +0.0
67,539 + CA264_21030 0.85 +1.9
67,540 - CA264_21030 0.85 +0.4
67,540 - CA264_21030 0.85 +0.5
67,668 + +0.2
67,668 + +1.0
67,668 + -0.4
67,676 - +0.3
67,695 - -0.6
67,704 + +0.4
67,755 + +0.8
67,756 - +0.1
67,768 - +1.5
67,781 + +0.6
67,782 - -0.4
67,782 - +1.0
67,782 - +0.1
67,782 - +0.6
67,782 - -0.2
67,798 - +0.6
67,812 + -1.0
67,812 + -1.0
67,813 - -1.7
67,816 + -1.1
67,816 + +0.3
67,817 - -1.0
67,845 - -0.1
67,845 - +0.2
67,861 + +0.8
67,861 + +0.1
67,874 - -0.1
67,874 - -1.1
67,874 - +1.0
67,874 - +0.3
67,965 + CA264_21035 0.13 +0.8
68,077 + CA264_21035 0.19 -0.4
68,077 + CA264_21035 0.19 +0.6
68,077 + CA264_21035 0.19 -0.2
68,117 + CA264_21035 0.21 -0.4
68,118 - CA264_21035 0.21 -0.2
68,118 - CA264_21035 0.21 -0.2
68,142 + CA264_21035 0.22 -0.4
68,143 - CA264_21035 0.22 -0.2
68,144 + CA264_21035 0.22 -2.1
68,145 - CA264_21035 0.22 +0.6
68,248 + CA264_21035 0.28 -2.8
68,248 + CA264_21035 0.28 -0.3
68,248 + CA264_21035 0.28 -0.5
68,248 + CA264_21035 0.28 -0.1
68,248 + CA264_21035 0.28 -0.1
68,249 - CA264_21035 0.28 -0.2
68,251 + CA264_21035 0.28 +0.5
68,251 + CA264_21035 0.28 -0.2
68,394 + CA264_21035 0.35 -0.1
68,394 + CA264_21035 0.35 +0.6
68,394 + CA264_21035 0.35 -0.0
68,413 - CA264_21035 0.36 +0.7
68,413 - CA264_21035 0.36 +0.2
68,440 + CA264_21035 0.37 +0.3
68,443 + CA264_21035 0.38 +0.9
68,449 + CA264_21035 0.38 -1.0
68,461 - CA264_21035 0.38 +1.2
68,554 + CA264_21035 0.43 +0.4

Or see this region's nucleotide sequence