Experiment: m.b. Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18670 and CA264_18675 are separated by 122 nucleotides CA264_18675 and CA264_18680 are separated by 128 nucleotides CA264_18680 and CA264_18685 are separated by 78 nucleotides CA264_18685 and CA264_18690 are separated by 116 nucleotides
CA264_18670: CA264_18670 - cold-shock protein, at 4,338,729 to 4,338,923
_18670
CA264_18675: CA264_18675 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 4,339,046 to 4,339,543
_18675
CA264_18680: CA264_18680 - Fe-S assembly protein IscX, at 4,339,672 to 4,339,908
_18680
CA264_18685: CA264_18685 - ferredoxin, at 4,339,987 to 4,340,301
_18685
CA264_18690: CA264_18690 - hypothetical protein, at 4,340,418 to 4,341,197
_18690
Position (kb)
4339
4340 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4338.721 kb on - strand at 4338.721 kb on - strand at 4338.747 kb on + strand at 4338.774 kb on + strand, within CA264_18670 at 4338.774 kb on + strand, within CA264_18670 at 4338.774 kb on + strand, within CA264_18670 at 4338.774 kb on + strand, within CA264_18670 at 4338.774 kb on + strand, within CA264_18670 at 4338.775 kb on - strand, within CA264_18670 at 4338.887 kb on + strand, within CA264_18670 at 4338.928 kb on - strand at 4338.983 kb on + strand at 4338.983 kb on + strand at 4339.071 kb on - strand at 4339.224 kb on + strand, within CA264_18675 at 4339.224 kb on + strand, within CA264_18675 at 4339.224 kb on + strand, within CA264_18675 at 4339.225 kb on - strand, within CA264_18675 at 4339.225 kb on - strand, within CA264_18675 at 4339.225 kb on - strand, within CA264_18675 at 4339.225 kb on - strand, within CA264_18675 at 4339.230 kb on - strand, within CA264_18675 at 4339.244 kb on + strand, within CA264_18675 at 4339.258 kb on - strand, within CA264_18675 at 4339.258 kb on - strand, within CA264_18675 at 4339.264 kb on - strand, within CA264_18675 at 4339.313 kb on + strand, within CA264_18675 at 4339.481 kb on + strand, within CA264_18675 at 4339.569 kb on + strand at 4339.574 kb on + strand at 4339.575 kb on - strand at 4339.634 kb on - strand at 4339.908 kb on + strand at 4339.930 kb on - strand at 4339.943 kb on + strand at 4339.981 kb on - strand at 4340.334 kb on - strand at 4340.334 kb on - strand at 4340.347 kb on - strand at 4340.443 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml remove 4,338,721 - -0.4 4,338,721 - +0.9 4,338,747 + +1.0 4,338,774 + CA264_18670 0.23 -2.6 4,338,774 + CA264_18670 0.23 -0.5 4,338,774 + CA264_18670 0.23 -0.9 4,338,774 + CA264_18670 0.23 -1.2 4,338,774 + CA264_18670 0.23 -0.7 4,338,775 - CA264_18670 0.24 +0.5 4,338,887 + CA264_18670 0.81 -1.7 4,338,928 - -1.6 4,338,983 + -0.4 4,338,983 + +1.6 4,339,071 - -0.8 4,339,224 + CA264_18675 0.36 -0.6 4,339,224 + CA264_18675 0.36 +1.9 4,339,224 + CA264_18675 0.36 -0.3 4,339,225 - CA264_18675 0.36 -0.4 4,339,225 - CA264_18675 0.36 +0.3 4,339,225 - CA264_18675 0.36 -2.0 4,339,225 - CA264_18675 0.36 -1.1 4,339,230 - CA264_18675 0.37 +0.7 4,339,244 + CA264_18675 0.40 -0.1 4,339,258 - CA264_18675 0.43 +0.0 4,339,258 - CA264_18675 0.43 +1.9 4,339,264 - CA264_18675 0.44 +0.2 4,339,313 + CA264_18675 0.54 -0.7 4,339,481 + CA264_18675 0.87 -2.3 4,339,569 + -0.3 4,339,574 + -0.3 4,339,575 - -0.1 4,339,634 - -0.3 4,339,908 + -0.4 4,339,930 - +0.6 4,339,943 + -0.7 4,339,981 - +0.1 4,340,334 - +0.5 4,340,334 - -0.9 4,340,347 - +2.4 4,340,443 - -2.1
Or see this region's nucleotide sequence