Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18060

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18050 and CA264_18055 are separated by 215 nucleotidesCA264_18055 and CA264_18060 are separated by 82 nucleotidesCA264_18060 and CA264_18065 are separated by 112 nucleotides CA264_18050: CA264_18050 - hypothetical protein, at 4,196,992 to 4,198,557 _18050 CA264_18055: CA264_18055 - hypothetical protein, at 4,198,773 to 4,199,456 _18055 CA264_18060: CA264_18060 - hypothetical protein, at 4,199,539 to 4,200,117 _18060 CA264_18065: CA264_18065 - asparagine--tRNA ligase, at 4,200,230 to 4,201,669 _18065 Position (kb) 4199 4200 4201Strain fitness (log2 ratio) -2 -1 0 1 2at 4198.551 kb on + strandat 4198.563 kb on - strandat 4198.563 kb on - strandat 4198.576 kb on - strandat 4198.576 kb on - strandat 4198.577 kb on + strandat 4198.598 kb on + strandat 4198.619 kb on + strandat 4198.676 kb on + strandat 4198.704 kb on + strandat 4198.705 kb on - strandat 4198.709 kb on + strandat 4198.709 kb on + strandat 4198.744 kb on + strandat 4198.744 kb on + strandat 4198.759 kb on + strandat 4198.759 kb on + strandat 4198.774 kb on + strandat 4198.774 kb on + strandat 4198.774 kb on + strandat 4198.788 kb on + strandat 4198.788 kb on + strandat 4198.789 kb on - strandat 4198.868 kb on + strand, within CA264_18055at 4198.898 kb on + strand, within CA264_18055at 4198.942 kb on + strand, within CA264_18055at 4198.944 kb on + strand, within CA264_18055at 4199.058 kb on + strand, within CA264_18055at 4199.058 kb on + strand, within CA264_18055at 4199.059 kb on - strand, within CA264_18055at 4199.061 kb on + strand, within CA264_18055at 4199.061 kb on + strand, within CA264_18055at 4199.062 kb on - strand, within CA264_18055at 4199.062 kb on - strand, within CA264_18055at 4199.100 kb on + strand, within CA264_18055at 4199.108 kb on + strand, within CA264_18055at 4199.108 kb on + strand, within CA264_18055at 4199.151 kb on + strand, within CA264_18055at 4199.152 kb on - strand, within CA264_18055at 4199.197 kb on - strand, within CA264_18055at 4199.197 kb on - strand, within CA264_18055at 4199.266 kb on + strand, within CA264_18055at 4199.266 kb on + strand, within CA264_18055at 4199.266 kb on + strand, within CA264_18055at 4199.267 kb on - strand, within CA264_18055at 4199.279 kb on + strand, within CA264_18055at 4199.279 kb on + strand, within CA264_18055at 4199.280 kb on - strand, within CA264_18055at 4199.280 kb on - strand, within CA264_18055at 4199.301 kb on + strand, within CA264_18055at 4199.301 kb on + strand, within CA264_18055at 4199.302 kb on - strand, within CA264_18055at 4199.302 kb on - strand, within CA264_18055at 4199.302 kb on - strand, within CA264_18055at 4199.302 kb on - strand, within CA264_18055at 4199.348 kb on - strand, within CA264_18055at 4199.348 kb on - strand, within CA264_18055at 4199.362 kb on + strand, within CA264_18055at 4199.362 kb on + strand, within CA264_18055at 4199.363 kb on - strand, within CA264_18055at 4199.368 kb on + strand, within CA264_18055at 4199.368 kb on + strand, within CA264_18055at 4199.369 kb on - strand, within CA264_18055at 4199.403 kb on + strandat 4199.417 kb on + strandat 4199.425 kb on - strandat 4199.425 kb on - strandat 4199.425 kb on - strandat 4199.425 kb on - strandat 4199.425 kb on - strandat 4199.431 kb on - strandat 4199.431 kb on - strandat 4199.431 kb on - strandat 4199.468 kb on + strandat 4199.469 kb on - strandat 4199.471 kb on + strandat 4199.482 kb on - strandat 4199.540 kb on + strandat 4199.714 kb on + strand, within CA264_18060at 4199.715 kb on - strand, within CA264_18060at 4199.715 kb on - strand, within CA264_18060at 4199.727 kb on - strand, within CA264_18060at 4199.730 kb on + strand, within CA264_18060at 4199.730 kb on + strand, within CA264_18060at 4199.730 kb on + strand, within CA264_18060at 4199.731 kb on - strand, within CA264_18060at 4199.731 kb on - strand, within CA264_18060at 4199.817 kb on + strand, within CA264_18060at 4199.831 kb on - strand, within CA264_18060at 4199.831 kb on - strand, within CA264_18060at 4199.831 kb on - strand, within CA264_18060at 4199.831 kb on - strand, within CA264_18060at 4199.834 kb on + strand, within CA264_18060at 4199.835 kb on - strand, within CA264_18060at 4199.882 kb on + strand, within CA264_18060at 4199.883 kb on - strand, within CA264_18060at 4199.885 kb on + strand, within CA264_18060at 4199.886 kb on - strand, within CA264_18060at 4199.886 kb on - strand, within CA264_18060at 4199.961 kb on + strand, within CA264_18060at 4200.132 kb on - strandat 4200.220 kb on - strandat 4200.220 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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4,198,551 + -0.1
4,198,563 - +1.6
4,198,563 - -0.4
4,198,576 - +0.9
4,198,576 - -0.2
4,198,577 + +0.7
4,198,598 + +0.1
4,198,619 + +0.0
4,198,676 + +0.3
4,198,704 + +0.7
4,198,705 - +0.2
4,198,709 + +0.4
4,198,709 + -0.5
4,198,744 + +0.3
4,198,744 + +0.8
4,198,759 + -0.5
4,198,759 + +1.1
4,198,774 + +1.5
4,198,774 + +0.4
4,198,774 + +0.1
4,198,788 + -0.5
4,198,788 + -0.1
4,198,789 - +0.3
4,198,868 + CA264_18055 0.14 +0.9
4,198,898 + CA264_18055 0.18 -0.1
4,198,942 + CA264_18055 0.25 -0.4
4,198,944 + CA264_18055 0.25 -0.1
4,199,058 + CA264_18055 0.42 -0.9
4,199,058 + CA264_18055 0.42 +0.1
4,199,059 - CA264_18055 0.42 -0.2
4,199,061 + CA264_18055 0.42 -0.4
4,199,061 + CA264_18055 0.42 -0.9
4,199,062 - CA264_18055 0.42 +0.9
4,199,062 - CA264_18055 0.42 +0.3
4,199,100 + CA264_18055 0.48 -0.2
4,199,108 + CA264_18055 0.49 +0.4
4,199,108 + CA264_18055 0.49 -1.4
4,199,151 + CA264_18055 0.55 +0.4
4,199,152 - CA264_18055 0.55 +0.2
4,199,197 - CA264_18055 0.62 +0.9
4,199,197 - CA264_18055 0.62 +0.9
4,199,266 + CA264_18055 0.72 +1.3
4,199,266 + CA264_18055 0.72 -1.9
4,199,266 + CA264_18055 0.72 +0.0
4,199,267 - CA264_18055 0.72 +0.5
4,199,279 + CA264_18055 0.74 -0.4
4,199,279 + CA264_18055 0.74 -1.5
4,199,280 - CA264_18055 0.74 +0.0
4,199,280 - CA264_18055 0.74 +0.1
4,199,301 + CA264_18055 0.77 +0.7
4,199,301 + CA264_18055 0.77 +0.1
4,199,302 - CA264_18055 0.77 +0.3
4,199,302 - CA264_18055 0.77 +0.1
4,199,302 - CA264_18055 0.77 -0.1
4,199,302 - CA264_18055 0.77 -0.1
4,199,348 - CA264_18055 0.84 -0.4
4,199,348 - CA264_18055 0.84 +0.9
4,199,362 + CA264_18055 0.86 +1.1
4,199,362 + CA264_18055 0.86 -0.0
4,199,363 - CA264_18055 0.86 +0.2
4,199,368 + CA264_18055 0.87 +0.5
4,199,368 + CA264_18055 0.87 +0.7
4,199,369 - CA264_18055 0.87 +0.9
4,199,403 + +0.1
4,199,417 + -0.4
4,199,425 - +1.1
4,199,425 - -0.2
4,199,425 - +1.7
4,199,425 - +0.4
4,199,425 - +0.3
4,199,431 - +0.2
4,199,431 - -0.8
4,199,431 - +0.9
4,199,468 + -0.3
4,199,469 - -0.4
4,199,471 + +0.0
4,199,482 - +0.4
4,199,540 + -0.7
4,199,714 + CA264_18060 0.30 -0.2
4,199,715 - CA264_18060 0.30 -0.2
4,199,715 - CA264_18060 0.30 -0.3
4,199,727 - CA264_18060 0.32 +1.3
4,199,730 + CA264_18060 0.33 -0.7
4,199,730 + CA264_18060 0.33 +0.8
4,199,730 + CA264_18060 0.33 +2.0
4,199,731 - CA264_18060 0.33 +2.2
4,199,731 - CA264_18060 0.33 +0.2
4,199,817 + CA264_18060 0.48 +2.3
4,199,831 - CA264_18060 0.50 +1.0
4,199,831 - CA264_18060 0.50 -0.3
4,199,831 - CA264_18060 0.50 +1.1
4,199,831 - CA264_18060 0.50 -0.1
4,199,834 + CA264_18060 0.51 +1.1
4,199,835 - CA264_18060 0.51 +0.3
4,199,882 + CA264_18060 0.59 +0.0
4,199,883 - CA264_18060 0.59 +1.5
4,199,885 + CA264_18060 0.60 -0.9
4,199,886 - CA264_18060 0.60 +0.8
4,199,886 - CA264_18060 0.60 +0.5
4,199,961 + CA264_18060 0.73 +1.6
4,200,132 - +0.7
4,200,220 - -0.6
4,200,220 - +0.0

Or see this region's nucleotide sequence