Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17325

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17320 and CA264_17325 overlap by 23 nucleotidesCA264_17325 and CA264_17330 are separated by 136 nucleotides CA264_17320: CA264_17320 - hypothetical protein, at 4,033,806 to 4,036,313 _17320 CA264_17325: CA264_17325 - isoleucine--tRNA ligase, at 4,036,291 to 4,039,644 _17325 CA264_17330: CA264_17330 - lipoprotein signal peptidase, at 4,039,781 to 4,040,404 _17330 Position (kb) 4036 4037 4038 4039 4040Strain fitness (log2 ratio) -2 -1 0 1 2at 4035.365 kb on + strand, within CA264_17320at 4035.394 kb on + strand, within CA264_17320at 4035.395 kb on - strand, within CA264_17320at 4035.476 kb on - strand, within CA264_17320at 4035.490 kb on + strand, within CA264_17320at 4035.491 kb on - strand, within CA264_17320at 4035.491 kb on - strand, within CA264_17320at 4035.530 kb on + strand, within CA264_17320at 4035.590 kb on + strand, within CA264_17320at 4035.701 kb on + strand, within CA264_17320at 4035.727 kb on + strand, within CA264_17320at 4035.752 kb on + strand, within CA264_17320at 4035.753 kb on - strand, within CA264_17320at 4035.767 kb on - strand, within CA264_17320at 4035.797 kb on - strand, within CA264_17320at 4035.807 kb on - strand, within CA264_17320at 4035.854 kb on + strand, within CA264_17320at 4035.854 kb on + strand, within CA264_17320at 4035.863 kb on - strand, within CA264_17320at 4035.874 kb on + strand, within CA264_17320at 4035.874 kb on + strand, within CA264_17320at 4035.874 kb on + strand, within CA264_17320at 4035.875 kb on - strand, within CA264_17320at 4035.921 kb on + strand, within CA264_17320at 4035.923 kb on + strand, within CA264_17320at 4035.923 kb on + strand, within CA264_17320at 4035.924 kb on - strand, within CA264_17320at 4035.924 kb on - strand, within CA264_17320at 4036.012 kb on - strand, within CA264_17320at 4036.081 kb on + strandat 4036.082 kb on - strandat 4036.136 kb on + strandat 4036.136 kb on + strandat 4036.137 kb on - strandat 4036.137 kb on - strandat 4036.167 kb on + strandat 4036.167 kb on + strandat 4036.167 kb on + strandat 4036.171 kb on + strandat 4036.171 kb on + strandat 4036.171 kb on + strandat 4036.172 kb on - strandat 4036.172 kb on - strandat 4036.172 kb on - strandat 4036.172 kb on - strandat 4036.264 kb on + strandat 4039.646 kb on + strandat 4039.678 kb on + strandat 4039.692 kb on + strandat 4039.693 kb on - strandat 4039.694 kb on + strandat 4039.717 kb on + strandat 4039.720 kb on + strandat 4039.721 kb on - strandat 4039.742 kb on - strandat 4039.742 kb on - strandat 4039.749 kb on - strandat 4039.769 kb on + strandat 4040.410 kb on + strandat 4040.410 kb on + strandat 4040.410 kb on + strandat 4040.427 kb on - strandat 4040.490 kb on + strandat 4040.523 kb on + strandat 4040.532 kb on - strandat 4040.560 kb on + strandat 4040.560 kb on + strandat 4040.573 kb on - strandat 4040.573 kb on - strandat 4040.575 kb on - strandat 4040.614 kb on + strandat 4040.614 kb on + strandat 4040.614 kb on + strandat 4040.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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4,035,365 + CA264_17320 0.62 -1.0
4,035,394 + CA264_17320 0.63 -0.2
4,035,395 - CA264_17320 0.63 +0.5
4,035,476 - CA264_17320 0.67 -1.8
4,035,490 + CA264_17320 0.67 +0.3
4,035,491 - CA264_17320 0.67 +0.9
4,035,491 - CA264_17320 0.67 +0.4
4,035,530 + CA264_17320 0.69 -0.3
4,035,590 + CA264_17320 0.71 -0.3
4,035,701 + CA264_17320 0.76 +1.2
4,035,727 + CA264_17320 0.77 +1.4
4,035,752 + CA264_17320 0.78 +0.2
4,035,753 - CA264_17320 0.78 -0.5
4,035,767 - CA264_17320 0.78 +0.5
4,035,797 - CA264_17320 0.79 +0.1
4,035,807 - CA264_17320 0.80 -0.6
4,035,854 + CA264_17320 0.82 +0.9
4,035,854 + CA264_17320 0.82 +0.1
4,035,863 - CA264_17320 0.82 +0.3
4,035,874 + CA264_17320 0.82 +0.2
4,035,874 + CA264_17320 0.82 +0.8
4,035,874 + CA264_17320 0.82 +0.8
4,035,875 - CA264_17320 0.82 -0.3
4,035,921 + CA264_17320 0.84 +0.5
4,035,923 + CA264_17320 0.84 -0.4
4,035,923 + CA264_17320 0.84 -0.3
4,035,924 - CA264_17320 0.84 +0.3
4,035,924 - CA264_17320 0.84 -0.3
4,036,012 - CA264_17320 0.88 +0.5
4,036,081 + -0.4
4,036,082 - +0.2
4,036,136 + +2.2
4,036,136 + +0.4
4,036,137 - +0.5
4,036,137 - -0.6
4,036,167 + +0.9
4,036,167 + -0.0
4,036,167 + +0.9
4,036,171 + -0.5
4,036,171 + -0.3
4,036,171 + -0.1
4,036,172 - -1.8
4,036,172 - +0.2
4,036,172 - +0.5
4,036,172 - -0.1
4,036,264 + +1.8
4,039,646 + +0.6
4,039,678 + +1.8
4,039,692 + +0.8
4,039,693 - +0.6
4,039,694 + +1.0
4,039,717 + +1.9
4,039,720 + +0.9
4,039,721 - +0.7
4,039,742 - +0.0
4,039,742 - +0.6
4,039,749 - -0.3
4,039,769 + +1.2
4,040,410 + -1.8
4,040,410 + -0.7
4,040,410 + +0.0
4,040,427 - -0.6
4,040,490 + -0.5
4,040,523 + -1.0
4,040,532 - +0.0
4,040,560 + -0.2
4,040,560 + -0.1
4,040,573 - +0.4
4,040,573 - -0.6
4,040,575 - -1.1
4,040,614 + +0.4
4,040,614 + -0.7
4,040,614 + -0.4
4,040,615 - -1.1

Or see this region's nucleotide sequence