Experiment: m.b. Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16430 and CA264_16435 are separated by 64 nucleotides CA264_16435 and CA264_16440 are separated by 72 nucleotides CA264_16440 and CA264_16445 are separated by 456 nucleotides
CA264_16430: CA264_16430 - TonB dependent receptor, at 3,821,084 to 3,823,462
_16430
CA264_16435: CA264_16435 - hypothetical protein, at 3,823,527 to 3,824,096
_16435
CA264_16440: CA264_16440 - hypothetical protein, at 3,824,169 to 3,824,807
_16440
CA264_16445: CA264_16445 - hypothetical protein, at 3,825,264 to 3,825,827
_16445
Position (kb)
3824
3825 Strain fitness (log2 ratio)
-1
0
1
2 at 3823.172 kb on + strand, within CA264_16430 at 3823.181 kb on + strand, within CA264_16430 at 3823.182 kb on - strand, within CA264_16430 at 3823.182 kb on - strand, within CA264_16430 at 3823.182 kb on - strand, within CA264_16430 at 3823.182 kb on - strand, within CA264_16430 at 3823.182 kb on - strand, within CA264_16430 at 3823.183 kb on + strand, within CA264_16430 at 3823.183 kb on + strand, within CA264_16430 at 3823.184 kb on - strand, within CA264_16430 at 3823.184 kb on - strand, within CA264_16430 at 3823.200 kb on + strand, within CA264_16430 at 3823.200 kb on + strand, within CA264_16430 at 3823.201 kb on - strand, within CA264_16430 at 3823.201 kb on - strand, within CA264_16430 at 3823.201 kb on - strand, within CA264_16430 at 3823.201 kb on - strand, within CA264_16430 at 3823.201 kb on - strand, within CA264_16430 at 3823.202 kb on + strand, within CA264_16430 at 3823.202 kb on + strand, within CA264_16430 at 3823.202 kb on + strand, within CA264_16430 at 3823.202 kb on + strand, within CA264_16430 at 3823.203 kb on - strand, within CA264_16430 at 3823.203 kb on - strand, within CA264_16430 at 3823.203 kb on - strand, within CA264_16430 at 3823.206 kb on + strand, within CA264_16430 at 3823.222 kb on + strand, within CA264_16430 at 3823.222 kb on + strand, within CA264_16430 at 3823.222 kb on + strand, within CA264_16430 at 3823.223 kb on - strand, within CA264_16430 at 3823.223 kb on - strand, within CA264_16430 at 3823.386 kb on + strand at 3823.386 kb on + strand at 3823.386 kb on + strand at 3823.392 kb on - strand at 3823.395 kb on - strand at 3823.473 kb on - strand at 3823.497 kb on + strand at 3823.506 kb on - strand at 3823.521 kb on + strand at 3823.521 kb on + strand at 3823.521 kb on + strand at 3823.521 kb on + strand at 3823.522 kb on - strand at 3823.522 kb on - strand at 3823.522 kb on - strand at 3823.522 kb on - strand at 3823.523 kb on + strand at 3823.523 kb on + strand at 3823.523 kb on + strand at 3823.548 kb on + strand at 3823.564 kb on + strand at 3823.640 kb on - strand, within CA264_16435 at 3823.640 kb on - strand, within CA264_16435 at 3823.644 kb on - strand, within CA264_16435 at 3823.710 kb on + strand, within CA264_16435 at 3823.751 kb on + strand, within CA264_16435 at 3823.751 kb on + strand, within CA264_16435 at 3823.778 kb on + strand, within CA264_16435 at 3823.779 kb on - strand, within CA264_16435 at 3823.779 kb on - strand, within CA264_16435 at 3823.779 kb on - strand, within CA264_16435 at 3823.784 kb on + strand, within CA264_16435 at 3823.785 kb on - strand, within CA264_16435 at 3823.812 kb on - strand, within CA264_16435 at 3823.820 kb on + strand, within CA264_16435 at 3823.910 kb on + strand, within CA264_16435 at 3823.940 kb on - strand, within CA264_16435 at 3823.992 kb on - strand, within CA264_16435 at 3823.992 kb on - strand, within CA264_16435 at 3823.998 kb on - strand, within CA264_16435 at 3824.022 kb on - strand, within CA264_16435 at 3824.084 kb on + strand at 3824.084 kb on + strand at 3824.085 kb on - strand at 3824.085 kb on - strand at 3824.107 kb on + strand at 3824.108 kb on - strand at 3824.113 kb on + strand at 3824.170 kb on + strand at 3824.171 kb on - strand at 3824.269 kb on + strand, within CA264_16440 at 3824.295 kb on - strand, within CA264_16440 at 3824.391 kb on - strand, within CA264_16440 at 3824.481 kb on + strand, within CA264_16440 at 3824.758 kb on - strand at 3824.778 kb on + strand at 3824.824 kb on + strand at 3824.843 kb on - strand at 3824.879 kb on + strand at 3824.879 kb on + strand at 3824.879 kb on + strand at 3824.880 kb on - strand at 3824.907 kb on + strand at 3824.908 kb on - strand at 3824.908 kb on - strand at 3824.955 kb on - strand at 3824.970 kb on - strand at 3825.026 kb on + strand at 3825.026 kb on + strand at 3825.028 kb on + strand at 3825.028 kb on + strand at 3825.028 kb on + strand at 3825.029 kb on - strand at 3825.032 kb on + strand at 3825.032 kb on + strand at 3825.033 kb on - strand at 3825.033 kb on - strand at 3825.152 kb on - strand at 3825.249 kb on + strand at 3825.263 kb on + strand at 3825.411 kb on - strand, within CA264_16445 at 3825.411 kb on - strand, within CA264_16445 at 3825.411 kb on - strand, within CA264_16445 at 3825.429 kb on - strand, within CA264_16445 at 3825.636 kb on + strand, within CA264_16445 at 3825.637 kb on - strand, within CA264_16445 at 3825.673 kb on + strand, within CA264_16445 at 3825.722 kb on - strand, within CA264_16445
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml remove 3,823,172 + CA264_16430 0.88 -0.6 3,823,181 + CA264_16430 0.88 -0.6 3,823,182 - CA264_16430 0.88 -0.2 3,823,182 - CA264_16430 0.88 -0.5 3,823,182 - CA264_16430 0.88 -0.1 3,823,182 - CA264_16430 0.88 +0.1 3,823,182 - CA264_16430 0.88 -0.7 3,823,183 + CA264_16430 0.88 -1.3 3,823,183 + CA264_16430 0.88 +0.3 3,823,184 - CA264_16430 0.88 -0.8 3,823,184 - CA264_16430 0.88 +0.9 3,823,200 + CA264_16430 0.89 +0.3 3,823,200 + CA264_16430 0.89 -0.5 3,823,201 - CA264_16430 0.89 -0.1 3,823,201 - CA264_16430 0.89 -0.7 3,823,201 - CA264_16430 0.89 -1.0 3,823,201 - CA264_16430 0.89 +1.2 3,823,201 - CA264_16430 0.89 +0.5 3,823,202 + CA264_16430 0.89 +1.2 3,823,202 + CA264_16430 0.89 +0.4 3,823,202 + CA264_16430 0.89 -0.4 3,823,202 + CA264_16430 0.89 -0.5 3,823,203 - CA264_16430 0.89 +1.4 3,823,203 - CA264_16430 0.89 -0.3 3,823,203 - CA264_16430 0.89 +0.4 3,823,206 + CA264_16430 0.89 +1.9 3,823,222 + CA264_16430 0.90 +0.5 3,823,222 + CA264_16430 0.90 -0.7 3,823,222 + CA264_16430 0.90 -0.7 3,823,223 - CA264_16430 0.90 -0.2 3,823,223 - CA264_16430 0.90 -0.2 3,823,386 + -0.4 3,823,386 + +1.3 3,823,386 + +0.1 3,823,392 - -0.7 3,823,395 - +1.3 3,823,473 - -0.5 3,823,497 + +0.0 3,823,506 - -0.4 3,823,521 + -0.9 3,823,521 + -0.4 3,823,521 + +0.4 3,823,521 + -0.1 3,823,522 - +0.2 3,823,522 - +0.9 3,823,522 - +0.1 3,823,522 - +1.1 3,823,523 + +0.5 3,823,523 + +0.5 3,823,523 + +0.7 3,823,548 + -0.3 3,823,564 + +0.1 3,823,640 - CA264_16435 0.20 +0.1 3,823,640 - CA264_16435 0.20 -0.0 3,823,644 - CA264_16435 0.21 +1.9 3,823,710 + CA264_16435 0.32 +0.6 3,823,751 + CA264_16435 0.39 +0.6 3,823,751 + CA264_16435 0.39 -0.8 3,823,778 + CA264_16435 0.44 -0.9 3,823,779 - CA264_16435 0.44 +0.6 3,823,779 - CA264_16435 0.44 -0.7 3,823,779 - CA264_16435 0.44 -0.7 3,823,784 + CA264_16435 0.45 +1.2 3,823,785 - CA264_16435 0.45 +0.1 3,823,812 - CA264_16435 0.50 +0.2 3,823,820 + CA264_16435 0.51 +0.2 3,823,910 + CA264_16435 0.67 +0.0 3,823,940 - CA264_16435 0.72 -0.5 3,823,992 - CA264_16435 0.82 -0.1 3,823,992 - CA264_16435 0.82 +0.4 3,823,998 - CA264_16435 0.83 +0.1 3,824,022 - CA264_16435 0.87 +0.6 3,824,084 + +0.5 3,824,084 + +0.6 3,824,085 - -0.1 3,824,085 - -0.4 3,824,107 + -0.0 3,824,108 - +0.5 3,824,113 + +1.9 3,824,170 + +0.7 3,824,171 - -0.7 3,824,269 + CA264_16440 0.16 +0.9 3,824,295 - CA264_16440 0.20 -0.7 3,824,391 - CA264_16440 0.35 +0.1 3,824,481 + CA264_16440 0.49 -0.1 3,824,758 - +0.3 3,824,778 + +0.9 3,824,824 + -0.4 3,824,843 - +0.3 3,824,879 + +0.1 3,824,879 + -0.5 3,824,879 + -0.4 3,824,880 - +0.1 3,824,907 + -0.1 3,824,908 - +1.1 3,824,908 - -0.3 3,824,955 - -0.6 3,824,970 - -0.9 3,825,026 + -0.7 3,825,026 + -0.3 3,825,028 + -0.3 3,825,028 + +0.1 3,825,028 + +0.1 3,825,029 - -0.4 3,825,032 + -0.4 3,825,032 + -0.1 3,825,033 - +0.4 3,825,033 - +0.4 3,825,152 - -0.9 3,825,249 + -1.5 3,825,263 + +0.5 3,825,411 - CA264_16445 0.26 -0.6 3,825,411 - CA264_16445 0.26 -0.2 3,825,411 - CA264_16445 0.26 +0.9 3,825,429 - CA264_16445 0.29 -1.1 3,825,636 + CA264_16445 0.66 -0.7 3,825,637 - CA264_16445 0.66 +0.5 3,825,673 + CA264_16445 0.73 -0.1 3,825,722 - CA264_16445 0.81 -0.1
Or see this region's nucleotide sequence