Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13865

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13855 and CA264_13860 overlap by 12 nucleotidesCA264_13860 and CA264_13865 are separated by 34 nucleotidesCA264_13865 and CA264_13870 are separated by 243 nucleotidesCA264_13870 and CA264_13875 are separated by 75 nucleotides CA264_13855: CA264_13855 - UV damage endonuclease UvsE, at 3,236,897 to 3,237,796 _13855 CA264_13860: CA264_13860 - hypothetical protein, at 3,237,785 to 3,238,282 _13860 CA264_13865: CA264_13865 - hypothetical protein, at 3,238,317 to 3,238,565 _13865 CA264_13870: CA264_13870 - hypothetical protein, at 3,238,809 to 3,239,201 _13870 CA264_13875: CA264_13875 - hypothetical protein, at 3,239,277 to 3,240,101 _13875 Position (kb) 3238 3239Strain fitness (log2 ratio) -2 -1 0 1 2at 3237.381 kb on - strand, within CA264_13855at 3237.443 kb on + strand, within CA264_13855at 3237.446 kb on - strand, within CA264_13855at 3237.655 kb on + strand, within CA264_13855at 3237.655 kb on + strand, within CA264_13855at 3237.658 kb on - strand, within CA264_13855at 3237.658 kb on - strand, within CA264_13855at 3237.715 kb on + strandat 3237.715 kb on + strandat 3237.887 kb on - strand, within CA264_13860at 3237.890 kb on + strand, within CA264_13860at 3237.891 kb on - strand, within CA264_13860at 3237.891 kb on - strand, within CA264_13860at 3238.212 kb on - strand, within CA264_13860at 3238.260 kb on + strandat 3238.292 kb on + strandat 3238.313 kb on + strandat 3238.399 kb on + strand, within CA264_13865at 3238.402 kb on + strand, within CA264_13865at 3238.547 kb on + strandat 3238.554 kb on + strandat 3238.579 kb on + strandat 3238.579 kb on + strandat 3238.580 kb on - strandat 3238.751 kb on + strandat 3238.752 kb on - strandat 3238.752 kb on - strandat 3238.777 kb on + strandat 3238.778 kb on - strandat 3238.810 kb on + strandat 3239.007 kb on - strand, within CA264_13870at 3239.072 kb on + strand, within CA264_13870at 3239.074 kb on + strand, within CA264_13870at 3239.075 kb on - strand, within CA264_13870at 3239.087 kb on - strand, within CA264_13870at 3239.126 kb on + strand, within CA264_13870at 3239.127 kb on - strand, within CA264_13870at 3239.127 kb on - strand, within CA264_13870at 3239.153 kb on + strand, within CA264_13870at 3239.236 kb on + strandat 3239.259 kb on + strandat 3239.377 kb on + strand, within CA264_13875at 3239.393 kb on - strand, within CA264_13875at 3239.393 kb on - strand, within CA264_13875at 3239.473 kb on - strand, within CA264_13875at 3239.509 kb on + strand, within CA264_13875at 3239.510 kb on - strand, within CA264_13875at 3239.522 kb on + strand, within CA264_13875

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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3,237,381 - CA264_13855 0.54 -0.3
3,237,443 + CA264_13855 0.61 +0.1
3,237,446 - CA264_13855 0.61 +0.0
3,237,655 + CA264_13855 0.84 -1.3
3,237,655 + CA264_13855 0.84 -0.2
3,237,658 - CA264_13855 0.85 +0.7
3,237,658 - CA264_13855 0.85 -0.2
3,237,715 + +0.1
3,237,715 + -0.3
3,237,887 - CA264_13860 0.20 -0.4
3,237,890 + CA264_13860 0.21 -0.5
3,237,891 - CA264_13860 0.21 -0.3
3,237,891 - CA264_13860 0.21 +0.6
3,238,212 - CA264_13860 0.86 +1.1
3,238,260 + -0.1
3,238,292 + +0.3
3,238,313 + -0.0
3,238,399 + CA264_13865 0.33 +1.2
3,238,402 + CA264_13865 0.34 +0.5
3,238,547 + -0.1
3,238,554 + -1.9
3,238,579 + +0.5
3,238,579 + -0.9
3,238,580 - -0.4
3,238,751 + -0.0
3,238,752 - -0.4
3,238,752 - -0.4
3,238,777 + +2.7
3,238,778 - +0.5
3,238,810 + +1.0
3,239,007 - CA264_13870 0.50 -0.9
3,239,072 + CA264_13870 0.67 +0.7
3,239,074 + CA264_13870 0.67 +0.0
3,239,075 - CA264_13870 0.68 +0.3
3,239,087 - CA264_13870 0.71 -0.3
3,239,126 + CA264_13870 0.81 -0.9
3,239,127 - CA264_13870 0.81 +0.2
3,239,127 - CA264_13870 0.81 -0.6
3,239,153 + CA264_13870 0.88 +0.3
3,239,236 + +1.3
3,239,259 + -0.6
3,239,377 + CA264_13875 0.12 -1.0
3,239,393 - CA264_13875 0.14 -0.0
3,239,393 - CA264_13875 0.14 -0.0
3,239,473 - CA264_13875 0.24 -0.1
3,239,509 + CA264_13875 0.28 +0.1
3,239,510 - CA264_13875 0.28 -2.3
3,239,522 + CA264_13875 0.30 +1.7

Or see this region's nucleotide sequence