Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13800

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13795 and CA264_13800 are separated by 222 nucleotidesCA264_13800 and CA264_13805 are separated by 207 nucleotides CA264_13795: CA264_13795 - phenylalanine--tRNA ligase subunit beta, at 3,222,727 to 3,225,144 _13795 CA264_13800: CA264_13800 - hypothetical protein, at 3,225,367 to 3,225,987 _13800 CA264_13805: CA264_13805 - sialate O-acetylesterase, at 3,226,195 to 3,228,159 _13805 Position (kb) 3225 3226Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3225.222 kb on - strandat 3225.290 kb on + strandat 3225.892 kb on + strand, within CA264_13800at 3225.896 kb on + strand, within CA264_13800at 3225.933 kb on - strandat 3226.098 kb on + strandat 3226.098 kb on + strandat 3226.134 kb on + strandat 3226.134 kb on + strandat 3226.163 kb on + strandat 3226.163 kb on + strandat 3226.164 kb on - strandat 3226.186 kb on + strandat 3226.187 kb on - strandat 3226.230 kb on - strandat 3226.305 kb on - strandat 3226.431 kb on + strand, within CA264_13805at 3226.577 kb on - strand, within CA264_13805at 3226.639 kb on + strand, within CA264_13805at 3226.640 kb on - strand, within CA264_13805at 3226.729 kb on + strand, within CA264_13805at 3226.729 kb on + strand, within CA264_13805at 3226.760 kb on - strand, within CA264_13805at 3226.762 kb on - strand, within CA264_13805at 3226.762 kb on - strand, within CA264_13805at 3226.766 kb on + strand, within CA264_13805at 3226.766 kb on + strand, within CA264_13805

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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3,225,222 - -1.8
3,225,290 + -0.8
3,225,892 + CA264_13800 0.85 -0.7
3,225,896 + CA264_13800 0.85 -1.3
3,225,933 - +0.3
3,226,098 + +0.1
3,226,098 + +0.5
3,226,134 + -1.3
3,226,134 + +0.7
3,226,163 + +2.7
3,226,163 + +0.6
3,226,164 - +0.2
3,226,186 + +0.6
3,226,187 - -0.9
3,226,230 - -1.6
3,226,305 - -0.4
3,226,431 + CA264_13805 0.12 -0.6
3,226,577 - CA264_13805 0.19 +1.7
3,226,639 + CA264_13805 0.23 +2.3
3,226,640 - CA264_13805 0.23 -1.3
3,226,729 + CA264_13805 0.27 -3.7
3,226,729 + CA264_13805 0.27 -0.7
3,226,760 - CA264_13805 0.29 -0.3
3,226,762 - CA264_13805 0.29 -0.3
3,226,762 - CA264_13805 0.29 -1.4
3,226,766 + CA264_13805 0.29 +0.7
3,226,766 + CA264_13805 0.29 +1.2

Or see this region's nucleotide sequence