Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06335

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06320 and CA264_06325 are separated by 22 nucleotidesCA264_06325 and CA264_06330 overlap by 4 nucleotidesCA264_06330 and CA264_06335 are separated by 5 nucleotidesCA264_06335 and CA264_06340 overlap by 35 nucleotidesCA264_06340 and CA264_06345 are separated by 210 nucleotides CA264_06320: CA264_06320 - Na+/H+ antiporter subunit D, at 1,469,903 to 1,471,420 _06320 CA264_06325: CA264_06325 - cation:proton antiporter, at 1,471,443 to 1,471,940 _06325 CA264_06330: CA264_06330 - cation:proton antiporter, at 1,471,937 to 1,472,206 _06330 CA264_06335: CA264_06335 - Na+/H+ antiporter subunit G, at 1,472,212 to 1,472,655 _06335 CA264_06340: CA264_06340 - protein phosphatase, at 1,472,621 to 1,473,442 _06340 CA264_06345: CA264_06345 - hypothetical protein, at 1,473,653 to 1,475,434 _06345 Position (kb) 1472 1473Strain fitness (log2 ratio) -3 -2 -1 0 1at 1471.224 kb on + strand, within CA264_06320at 1471.224 kb on + strand, within CA264_06320at 1471.225 kb on - strand, within CA264_06320at 1471.274 kb on + strandat 1471.275 kb on - strandat 1471.275 kb on - strandat 1471.281 kb on - strandat 1471.281 kb on - strandat 1471.329 kb on - strandat 1471.407 kb on + strandat 1471.407 kb on + strandat 1471.418 kb on + strandat 1471.427 kb on + strandat 1471.428 kb on - strandat 1471.437 kb on - strandat 1471.437 kb on - strandat 1471.437 kb on - strandat 1471.437 kb on - strandat 1471.489 kb on - strandat 1471.494 kb on + strand, within CA264_06325at 1471.525 kb on - strand, within CA264_06325at 1471.525 kb on - strand, within CA264_06325at 1471.601 kb on + strand, within CA264_06325at 1471.602 kb on - strand, within CA264_06325at 1471.606 kb on - strand, within CA264_06325at 1471.710 kb on + strand, within CA264_06325at 1471.711 kb on - strand, within CA264_06325at 1471.711 kb on - strand, within CA264_06325at 1471.766 kb on - strand, within CA264_06325at 1471.784 kb on + strand, within CA264_06325at 1471.784 kb on + strand, within CA264_06325at 1471.811 kb on + strand, within CA264_06325at 1471.812 kb on - strand, within CA264_06325at 1471.814 kb on - strand, within CA264_06325at 1471.819 kb on + strand, within CA264_06325at 1471.819 kb on + strand, within CA264_06325at 1471.819 kb on + strand, within CA264_06325at 1471.819 kb on + strand, within CA264_06325at 1471.843 kb on - strand, within CA264_06325at 1471.856 kb on - strand, within CA264_06325at 1471.856 kb on - strand, within CA264_06325at 1471.970 kb on - strand, within CA264_06330at 1471.980 kb on + strand, within CA264_06330at 1472.086 kb on - strand, within CA264_06330at 1472.181 kb on - strandat 1472.183 kb on + strandat 1472.188 kb on + strandat 1472.189 kb on - strandat 1472.189 kb on - strandat 1472.189 kb on - strandat 1472.197 kb on + strandat 1472.224 kb on - strandat 1472.224 kb on - strandat 1472.226 kb on - strandat 1472.330 kb on - strand, within CA264_06335at 1472.582 kb on + strand, within CA264_06335at 1472.600 kb on - strand, within CA264_06335at 1472.629 kb on + strandat 1472.630 kb on - strandat 1472.677 kb on - strandat 1472.719 kb on - strand, within CA264_06340at 1472.799 kb on - strand, within CA264_06340at 1472.799 kb on - strand, within CA264_06340at 1472.807 kb on - strand, within CA264_06340at 1472.807 kb on - strand, within CA264_06340at 1472.807 kb on - strand, within CA264_06340at 1472.815 kb on - strand, within CA264_06340at 1472.838 kb on + strand, within CA264_06340at 1473.105 kb on - strand, within CA264_06340at 1473.137 kb on - strand, within CA264_06340at 1473.282 kb on + strand, within CA264_06340at 1473.295 kb on + strand, within CA264_06340at 1473.307 kb on + strand, within CA264_06340at 1473.375 kb on - strandat 1473.466 kb on - strandat 1473.472 kb on + strandat 1473.473 kb on - strandat 1473.473 kb on - strandat 1473.501 kb on + strandat 1473.503 kb on + strandat 1473.503 kb on + strandat 1473.504 kb on - strandat 1473.511 kb on - strandat 1473.524 kb on - strandat 1473.524 kb on - strandat 1473.524 kb on - strandat 1473.622 kb on + strandat 1473.623 kb on - strandat 1473.643 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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1,471,224 + CA264_06320 0.87 -0.7
1,471,224 + CA264_06320 0.87 -1.1
1,471,225 - CA264_06320 0.87 -0.7
1,471,274 + -0.3
1,471,275 - -0.7
1,471,275 - -0.4
1,471,281 - +0.1
1,471,281 - -0.8
1,471,329 - -0.3
1,471,407 + -0.2
1,471,407 + -1.5
1,471,418 + -1.1
1,471,427 + -1.4
1,471,428 - -0.8
1,471,437 - -0.1
1,471,437 - -0.4
1,471,437 - -1.1
1,471,437 - -0.6
1,471,489 - -2.1
1,471,494 + CA264_06325 0.10 -0.5
1,471,525 - CA264_06325 0.16 -0.9
1,471,525 - CA264_06325 0.16 -0.5
1,471,601 + CA264_06325 0.32 -1.1
1,471,602 - CA264_06325 0.32 +0.1
1,471,606 - CA264_06325 0.33 +0.1
1,471,710 + CA264_06325 0.54 -0.9
1,471,711 - CA264_06325 0.54 +0.9
1,471,711 - CA264_06325 0.54 -0.2
1,471,766 - CA264_06325 0.65 -0.1
1,471,784 + CA264_06325 0.68 -1.5
1,471,784 + CA264_06325 0.68 -0.9
1,471,811 + CA264_06325 0.74 -0.9
1,471,812 - CA264_06325 0.74 -0.2
1,471,814 - CA264_06325 0.74 -1.2
1,471,819 + CA264_06325 0.76 -0.8
1,471,819 + CA264_06325 0.76 -1.9
1,471,819 + CA264_06325 0.76 -1.3
1,471,819 + CA264_06325 0.76 +0.3
1,471,843 - CA264_06325 0.80 -0.1
1,471,856 - CA264_06325 0.83 +0.8
1,471,856 - CA264_06325 0.83 +0.7
1,471,970 - CA264_06330 0.12 +1.3
1,471,980 + CA264_06330 0.16 -1.1
1,472,086 - CA264_06330 0.55 -0.5
1,472,181 - -0.6
1,472,183 + -0.6
1,472,188 + +0.4
1,472,189 - -0.3
1,472,189 - -0.6
1,472,189 - -0.2
1,472,197 + -0.8
1,472,224 - +1.2
1,472,224 - +0.5
1,472,226 - -0.9
1,472,330 - CA264_06335 0.27 -0.7
1,472,582 + CA264_06335 0.83 -0.9
1,472,600 - CA264_06335 0.87 +0.2
1,472,629 + -0.2
1,472,630 - -1.3
1,472,677 - -0.9
1,472,719 - CA264_06340 0.12 -0.0
1,472,799 - CA264_06340 0.22 -0.2
1,472,799 - CA264_06340 0.22 -0.1
1,472,807 - CA264_06340 0.23 -0.5
1,472,807 - CA264_06340 0.23 -3.4
1,472,807 - CA264_06340 0.23 -0.2
1,472,815 - CA264_06340 0.24 -0.3
1,472,838 + CA264_06340 0.26 -0.8
1,473,105 - CA264_06340 0.59 +0.0
1,473,137 - CA264_06340 0.63 -1.4
1,473,282 + CA264_06340 0.80 -1.5
1,473,295 + CA264_06340 0.82 -0.3
1,473,307 + CA264_06340 0.83 +0.5
1,473,375 - -2.1
1,473,466 - -1.1
1,473,472 + -2.4
1,473,473 - -0.6
1,473,473 - -1.2
1,473,501 + -1.2
1,473,503 + -0.1
1,473,503 + -2.4
1,473,504 - -1.2
1,473,511 - +0.3
1,473,524 - -0.8
1,473,524 - -0.8
1,473,524 - +0.1
1,473,622 + -0.7
1,473,623 - +0.3
1,473,643 + -0.0

Or see this region's nucleotide sequence